{
    "type": "genome",
    "identifier": "GCF_000771545.1",
    "organism": "Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854",
    "title": "Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Key Laboratory of Dairy BiotecInner Mongolia Agricultural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000771545.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02442033",
        "wgs_master": "JDUP00000000.1",
        "refseq_category": "na",
        "taxid": "1150460",
        "species_taxid": "1686",
        "organism_name": "Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854",
        "infraspecific_name": "strain=DSM 21854",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/11/04",
        "asm_name": "DSM-21854",
        "asm_submitter": "Key Laboratory of Dairy BiotecInner Mongolia Agricultural University",
        "gbrs_paired_asm": "GCA_000771545.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/771/545/GCF_000771545.1_DSM-21854",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2323455",
        "genome_size_ungapped": "2323455",
        "gc_percent": "56.500000",
        "replicon_count": "0",
        "scaffold_count": "68",
        "contig_count": "68",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000771545.1-RS_2024_03_31",
        "annotation_date": "2024-03-31",
        "total_gene_count": "2048",
        "protein_coding_gene_count": "1933",
        "non_coding_gene_count": "61",
        "pubmed_id": "25658111"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-11-04",
    "dateModified": "2014-11-04",
    "datePublished": "2014-11-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854"
        ],
        "sample_taxid": [
            "1150460"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.661 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2323455",
        "Number of Sequences": "68",
        "Longest Sequences (bp)": "316511",
        "N50 (bp)": "189541",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "56.3",
        "Number of CDSs": "1968",
        "Average Protein Length": "336.9",
        "Coding Ratio (%)": "85.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Bifidobacterium catenulatum subsp. kashiwanohense",
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                "taxid": 630129,
                "species_taxid": 1686,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 752,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bifidobacterium catenulatum subsp. kashiwanohense",
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                "accession": "GCA_001042615.1",
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            },
            {
                "organism_name": "Bifidobacterium catenulatum subsp. kashiwanohense",
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                "ani_threshold": 95,
                "status": "conclusive"
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            {
                "organism_name": "Bifidobacterium catenulatum",
                "strain": "strain=DSM 16992",
                "accession": "GCA_000173455.1",
                "taxid": 1686,
                "species_taxid": 1686,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.3644,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Bifidobacterium catenulatum",
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                "accession": "GCA_000771025.1",
                "taxid": 1686,
                "species_taxid": 1686,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.3486,
                "matched_fragments": 543,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bifidobacterium catenulatum",
                "strain": "strain=JCM 1194",
                "accession": "GCA_001025195.1",
                "taxid": 1686,
                "species_taxid": 1686,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.3332,
                "matched_fragments": 577,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bifidobacterium pseudocatenulatum",
                "strain": "strain=DSM 20438",
                "accession": "GCA_000173435.1",
                "taxid": 28026,
                "species_taxid": 28026,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.4785,
                "matched_fragments": 600,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium pseudocatenulatum",
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                "accession": "GCA_000771445.1",
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                "species_taxid": 28026,
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                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium scardovii",
                "strain": "strain=DSM 13734",
                "accession": "GCA_000770985.1",
                "taxid": 158787,
                "species_taxid": 158787,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium miconisargentati",
                "strain": "strain=82T25",
                "accession": "GCA_019331675.1",
                "taxid": 2834437,
                "species_taxid": 2834437,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.8513,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium amazonense",
                "strain": "strain=MA1",
                "accession": "GCA_018555435.2",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium mizhiense",
                "strain": "strain=S053-2",
                "accession": "GCA_020884755.1",
                "taxid": 2879940,
                "species_taxid": 2879940,
                "relation_to_type": "type",
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                "matched_fragments": 91,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_001042615.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
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            {
                "accession": "GCF_000800455.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
                "ani_circumscription_radius": 95.1942,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002742445.1",
                "gtdb_species": "s__Bifidobacterium sp002742445",
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                "num_clustered_genomes": 9,
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            },
            {
                "accession": "GCF_001025215.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
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                "mean_intra_species_ani": "98.12",
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                "num_clustered_genomes": 112,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.022,
        "cell_length": 0.328,
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        "growth_tmp": 37.0,
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        "gc_content": 56.15,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 1.0,
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        "coccobacillus_cell_shape": 0.0,
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    },
    "_genome_taxon": [
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        "catenulatum",
        "subsp.",
        "kashiwanohense",
        "JCM",
        "15439",
        "=",
        "DSM",
        "21854"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}