{ "type": "genome", "identifier": "GCF_000771625.1", "organism": "Bifidobacterium saguini DSM 23967", "title": "Bifidobacterium saguini DSM 23967", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Key Laboratory of Dairy BiotecInner Mongolia Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000771625.1", "bioproject": "PRJNA224116", "biosample": "SAMN02442037", "wgs_master": "JDUT00000000.1", "refseq_category": "na", "taxid": "1437607", "species_taxid": "762210", "organism_name": "Bifidobacterium saguini DSM 23967", "infraspecific_name": "strain=DSM 23967", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/11/04", "asm_name": "DSM-23967", "asm_submitter": "Key Laboratory of Dairy BiotecInner Mongolia Agricultural University", "gbrs_paired_asm": "GCA_000771625.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/771/625/GCF_000771625.1_DSM-23967", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2773425", "genome_size_ungapped": "2773425", "gc_percent": "56.500000", "replicon_count": "0", "scaffold_count": "46", "contig_count": "46", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000771625.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "2347", "protein_coding_gene_count": "2249", "non_coding_gene_count": "69", "pubmed_id": "25658111" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-11-04", "dateModified": "2014-11-04", "datePublished": "2014-11-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Bifidobacterium saguini DSM 23967" ], "sample_taxid": [ "1437607" ], "sample_host_organism": [], 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"type", "validated": true, "ani": 100.0, "matched_fragments": 907, "total_fragments": 907, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bifidobacterium saguini", "strain": "strain=DSMZ 23967", "accession": "GCA_017378515.1", "taxid": 762210, "species_taxid": 762210, "relation_to_type": "type", "validated": true, "ani": 99.988, "matched_fragments": 877, "total_fragments": 907, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bifidobacterium saguini", "strain": "strain=DSM 23967", "accession": "GCA_000741715.1", "taxid": 762210, "species_taxid": 762210, "relation_to_type": "type", "validated": true, "ani": 99.9695, "matched_fragments": 900, "total_fragments": 907, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bifidobacterium imperatoris", "strain": "strain=Tam1G", "accession": "GCA_002860405.1", "taxid": 2020965, "species_taxid": 2020965, "relation_to_type": "type", "validated": true, "ani": 93.945, "matched_fragments": 717, 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"below_threshold" }, { "organism_name": "Bifidobacterium miconisargentati", "strain": "strain=82T25", "accession": "GCA_019331675.1", "taxid": 2834437, "species_taxid": 2834437, "relation_to_type": "type", "validated": true, "ani": 82.914, "matched_fragments": 499, "total_fragments": 907, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium myosotis", "strain": "strain=DSM 100196", "accession": "GCA_002259745.1", "taxid": 1630166, "species_taxid": 1630166, "relation_to_type": "type", "validated": true, "ani": 82.1506, "matched_fragments": 466, "total_fragments": 907, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium amazonense", "strain": "strain=MA1", "accession": "GCA_018555435.2", "taxid": 2809027, "species_taxid": 2809027, "relation_to_type": "type", "validated": true, "ani": 80.7771, "matched_fragments": 321, "total_fragments": 907, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009193305.1", "gtdb_species": "s__Bifidobacterium cebidarum", "ani": 85.8575, "matched_fragments": 591, "total_fragments": 907, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002802865.1", "gtdb_species": "s__Bifidobacterium scaligerum", "ani": 83.4461, "matched_fragments": 523, "total_fragments": 907, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": 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"anaerobic_respiration": 0.823, "aerobic_respiration": 0.029, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Bifidobacterium", "saguini", "DSM", "23967" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }