{ "type": "genome", "identifier": "GCF_000771665.1", "organism": "Bifidobacterium callitrichos DSM 23973", "title": "Bifidobacterium callitrichos DSM 23973", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Key Laboratory of Dairy BiotecInner Mongolia Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000771665.1", "bioproject": "PRJNA224116", "biosample": "SAMN02442039", "wgs_master": "JDUV00000000.1", "refseq_category": "na", "taxid": "1437609", "species_taxid": "762209", "organism_name": "Bifidobacterium callitrichos DSM 23973", "infraspecific_name": "strain=DSM 23973", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/11/04", "asm_name": "DSM-23973", "asm_submitter": "Key Laboratory of Dairy BiotecInner Mongolia Agricultural University", "gbrs_paired_asm": "GCA_000771665.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/771/665/GCF_000771665.1_DSM-23973", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2867214", "genome_size_ungapped": "2867214", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "106", "contig_count": "106", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000771665.1-RS_2024_08_06", "annotation_date": "2024-08-06", "total_gene_count": "2435", "protein_coding_gene_count": "2338", "non_coding_gene_count": "55", "pubmed_id": "25658111" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-11-04", "dateModified": "2014-11-04", "datePublished": "2014-11-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Bifidobacterium callitrichos DSM 23973" ], "sample_taxid": [ "1437609" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.796 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2867214", "Number of Sequences": "106", "Longest Sequences (bp)": "253016", "N50 (bp)": "131359", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.6", "Number of CDSs": "2340", "Average Protein Length": "349.4", "Coding Ratio (%)": "85.5", "Number of rRNAs": "0", "Number of tRNAs": "53", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bifidobacterium callitrichos", "strain": "strain=DSM 23973", "accession": "GCA_000771665.1", "taxid": 762209, 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"matched_fragments": 553, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium amazonense", "strain": "strain=MA1", "accession": "GCA_018555435.2", "taxid": 2809027, "species_taxid": 2809027, "relation_to_type": "type", "validated": true, "ani": 83.8036, "matched_fragments": 552, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium miconisargentati", "strain": "strain=82T25", "accession": "GCA_019331675.1", "taxid": 2834437, "species_taxid": 2834437, "relation_to_type": "type", "validated": true, "ani": 83.6229, "matched_fragments": 504, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium pseudolongum subsp. pseudolongum", "strain": "strain=ATCC 25526", "accession": "GCA_022691205.1", "taxid": 31954, "species_taxid": 1694, "relation_to_type": "type", "validated": true, "ani": 79.6969, "matched_fragments": 298, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fulva", "strain": "strain=DKR-3", "accession": "GCA_018531375.1", "taxid": 2835530, "species_taxid": 2835530, "relation_to_type": "type", "validated": true, "ani": 76.6521, "matched_fragments": 125, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea solisilvae", "strain": "strain=KACC 19191", "accession": "GCA_016464425.1", "taxid": 2072922, "species_taxid": 2072922, "relation_to_type": "type", "validated": true, "ani": 76.3942, "matched_fragments": 140, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000741175.1", "gtdb_species": "s__Bifidobacterium callitrichos", "ani": 99.9771, "matched_fragments": 908, "total_fragments": 920, "gtdb_taxonomy": 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