{ "type": "genome", "identifier": "GCF_000771745.2", "organism": "Thermus filiformis", "title": "Thermus filiformis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Centro Nacional de Pesquisa em Energia e Materiais", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000771745.2", "bioproject": "PRJNA224116", "biosample": "SAMN02898028", "wgs_master": "JPSL00000000.2", "refseq_category": "reference genome", "taxid": "276", "species_taxid": "276", "organism_name": "Thermus filiformis", "infraspecific_name": "strain=ATCC 43280", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/02/24", "asm_name": "THFILIv2", "asm_submitter": "Centro Nacional de Pesquisa em Energia e Materiais", "gbrs_paired_asm": "GCA_000771745.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/771/745/GCF_000771745.2_THFILIv2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2386081", "genome_size_ungapped": "2386081", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "40", "contig_count": "40", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000771745.2-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "2452", "protein_coding_gene_count": "2348", "non_coding_gene_count": "56", "pubmed_id": "25977443" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-02-24", "dateModified": "2015-02-24", "datePublished": "2015-02-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Thermus filiformis" ], "sample_taxid": [ "276" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New Zealand: Waimangu" ], "sample_host_location_id": [], "data_size": "0.630 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2386081", "Number of Sequences": "40", "Longest Sequences (bp)": "690156", "N50 (bp)": "551922", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.0", "Number of CDSs": "2378", "Average Protein Length": "309.7", "Coding Ratio (%)": "92.6", "Number of rRNAs": "6", "Number of tRNAs": "53", "Number of CRISPRs": "10" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thermus filiformis", "strain": "strain=ATCC 43280", "accession": "GCA_000771745.2", "taxid": 276, "species_taxid": 276, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 777, "total_fragments": 778, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Thermus arciformis", "strain": "strain=JCM 15153", "accession": "GCA_022556335.1", "taxid": 482827, "species_taxid": 482827, "relation_to_type": "type", "validated": true, "ani": 84.2599, "matched_fragments": 541, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus arciformis", "strain": "strain=CGMCC 1.6992", "accession": "GCA_900102145.1", "taxid": 482827, "species_taxid": 482827, "relation_to_type": "type", "validated": true, "ani": 84.2424, "matched_fragments": 558, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus thermophilus", "strain": "strain=HB8", "accession": "GCA_000091545.1", "taxid": 274, "species_taxid": 274, "relation_to_type": "type", "validated": true, "ani": 84.1256, "matched_fragments": 534, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus igniterrae", "strain": "strain=ATCC 700962", "accession": "GCA_000376265.1", "taxid": 88189, "species_taxid": 88189, "relation_to_type": "type", "validated": true, "ani": 83.9575, "matched_fragments": 522, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus oshimai", "strain": "strain=DSM 12092", "accession": "GCA_000373145.1", "taxid": 56957, "species_taxid": 56957, "relation_to_type": "type", "validated": true, "ani": 83.9546, "matched_fragments": 547, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus aquaticus", "strain": "strain=YT-1", "accession": "GCA_001280255.1", "taxid": 271, "species_taxid": 271, "relation_to_type": "type", "validated": true, "ani": 83.723, "matched_fragments": 538, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus parvatiensis", "strain": "strain=RL", "accession": "GCA_001535545.1", "taxid": 456163, "species_taxid": 456163, "relation_to_type": "type", "validated": true, "ani": 83.6695, "matched_fragments": 506, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus sediminis", "strain": "strain=L198", "accession": "GCA_003426945.1", "taxid": 1761908, "species_taxid": 1761908, "relation_to_type": "type", "validated": true, "ani": 83.3032, "matched_fragments": 514, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus thermamylovorans", "strain": "strain=CFH 72773T", "accession": "GCA_004307015.1", "taxid": 2509362, "species_taxid": 2509362, "relation_to_type": "type", "validated": true, "ani": 83.1148, "matched_fragments": 503, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus amyloliquefaciens", "strain": "strain=YIM 77409", "accession": "GCA_000744885.1", "taxid": 1449080, "species_taxid": 1449080, "relation_to_type": "type", "validated": true, "ani": 82.8964, "matched_fragments": 526, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus islandicus", "strain": "strain=DSM 21543", "accession": "GCA_000421625.1", "taxid": 540988, "species_taxid": 540988, "relation_to_type": "type", "validated": true, "ani": 82.8897, "matched_fragments": 517, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus caliditerrae", "strain": "strain=YIM 77925", "accession": "GCA_021462525.1", "taxid": 1330700, "species_taxid": 1330700, "relation_to_type": "type", "validated": true, "ani": 82.6239, "matched_fragments": 541, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus brevis", "strain": "strain=SYSU G05001", "accession": "GCA_019430925.1", "taxid": 2862456, "species_taxid": 2862456, "relation_to_type": "type", "validated": true, "ani": 81.5784, "matched_fragments": 525, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000771745.2", "gtdb_species": "s__Thermus_A filiformis", "ani": 100.0, "matched_fragments": 777, "total_fragments": 778, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Thermus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_900102145.1", "gtdb_species": "s__Thermus arciformis", "ani": 84.254, "matched_fragments": 555, "total_fragments": 778, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Thermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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