{ "type": "genome", "identifier": "GCF_000772915.1", "organism": "Streptococcus phocae subsp. salmonis", "title": "Streptococcus phocae subsp. salmonis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Universidad Austral de Chile", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000772915.1", "bioproject": "PRJNA224116", "biosample": "SAMN03114893", "wgs_master": "JSAP00000000.1", "refseq_category": "na", "taxid": "1000562", "species_taxid": "119224", "organism_name": "Streptococcus phocae subsp. salmonis", "infraspecific_name": "strain=C-4", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/11/06", "asm_name": "ASM77291v1", "asm_submitter": "Universidad Austral de Chile", "gbrs_paired_asm": "GCA_000772915.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/772/915/GCF_000772915.1_ASM77291v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1659203", "genome_size_ungapped": "1659203", "gc_percent": "39.500000", "replicon_count": "0", "scaffold_count": "105", "contig_count": "105", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000772915.1-RS_2024_10_21", "annotation_date": "2024-10-21", "total_gene_count": "1732", "protein_coding_gene_count": "1465", "non_coding_gene_count": "51", "pubmed_id": "25502668" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-11-06", "dateModified": "2014-11-06", "datePublished": "2014-11-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus phocae subsp. salmonis" ], "sample_taxid": [ "1000562" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Chile: Reloncavi Estuary" ], "sample_host_location_id": [], "data_size": "0.474 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.62, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1659203", "Number of Sequences": "105", "Longest Sequences (bp)": "116302", "N50 (bp)": "35632", "Gap Ratio (%)": "0.000060", "GCcontent (%)": "39.6", "Number of CDSs": "1684", "Average Protein Length": "277.4", "Coding Ratio (%)": "84.5", "Number of rRNAs": "3", "Number of tRNAs": "44", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus phocae subsp. salmonis", "strain": "strain=C-4", "accession": "GCA_000772915.1", "taxid": 1000562, "species_taxid": 119224, "relation_to_type": "type", "validated": true, "ani": 100.0, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pyogenes", "strain": "strain=CCUG 4207", "accession": "GCA_004028355.1", "taxid": 1314, "species_taxid": 1314, "relation_to_type": "type", "validated": true, "ani": 79.3137, "matched_fragments": 187, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus bovimastitidis", "strain": "strain=NZ1587", "accession": "GCA_001885095.1", "taxid": 1856638, "species_taxid": 1856638, "relation_to_type": "type", "validated": true, "ani": 79.3105, "matched_fragments": 122, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus dysgalactiae subsp. dysgalactiae", "strain": "strain=NCTC13731", "accession": "GCA_900459225.1", "taxid": 99822, "species_taxid": 1334, "relation_to_type": "type", "validated": true, "ani": 79.2525, "matched_fragments": 211, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus canis", "strain": "strain=NCTC12191", "accession": "GCA_900636575.1", "taxid": 1329, "species_taxid": 1329, "relation_to_type": "type", "validated": true, "ani": 79.1667, "matched_fragments": 209, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pyogenes", "strain": "strain=DSM 20565", "accession": "GCA_000421785.1", "taxid": 1314, "species_taxid": 1314, "relation_to_type": "type", "validated": true, "ani": 79.1331, "matched_fragments": 181, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus dysgalactiae", "strain": "strain=FDAARGOS_1157", "accession": "GCA_016724885.1", "taxid": 1334, "species_taxid": 1334, "relation_to_type": "type", "validated": true, "ani": 79.0724, "matched_fragments": 216, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus uberis", "strain": "strain=NCTC3858", "accession": "GCA_900475595.1", "taxid": 1349, "species_taxid": 1349, "relation_to_type": "type", "validated": true, "ani": 79.0704, "matched_fragments": 132, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus downii", "strain": "strain=CECT 9732", "accession": "GCA_004353325.1", "taxid": 1968889, "species_taxid": 1968889, "relation_to_type": "type", "validated": true, "ani": 79.0555, "matched_fragments": 53, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pseudoporcinus", "strain": "strain=NCTC13786", "accession": "GCA_900637075.1", "taxid": 361101, "species_taxid": 361101, "relation_to_type": "type", "validated": true, "ani": 78.8926, "matched_fragments": 125, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus equinus", "strain": "strain=ATCC 9812", "accession": "GCA_000187265.1", "taxid": 1335, "species_taxid": 1335, "relation_to_type": "type", "validated": true, "ani": 78.8364, "matched_fragments": 90, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pseudoporcinus", "strain": "strain=LQ 940-04", "accession": "GCA_000188035.3", "taxid": 361101, "species_taxid": 361101, "relation_to_type": "type", "validated": true, "ani": 78.8253, "matched_fragments": 127, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus equi subsp. zooepidemicus", "strain": "strain=NCTC4676", "accession": "GCA_900459475.1", "taxid": 40041, "species_taxid": 1336, "relation_to_type": "type", "validated": true, "ani": 78.7889, "matched_fragments": 160, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus equi subsp. zooepidemicus", "strain": "strain=NCTC7023", "accession": "GCA_900460185.1", "taxid": 40041, "species_taxid": 1336, "relation_to_type": "type", "validated": true, "ani": 78.7737, "matched_fragments": 167, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus equi subsp. ruminatorum", "strain": "strain=CECT 5772", "accession": "GCA_000706805.1", "taxid": 254358, "species_taxid": 1336, "relation_to_type": "type", "validated": true, "ani": 78.7258, "matched_fragments": 162, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus infantis", "strain": "strain=ATCC 700779", "accession": "GCA_000260755.1", "taxid": 68892, "species_taxid": 68892, "relation_to_type": "suspected-type", "validated": true, "ani": 78.6699, "matched_fragments": 60, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus porcinus", "strain": "strain=NCTC10999", "accession": "GCA_900475415.1", "taxid": 1340, "species_taxid": 1340, 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