{
    "type": "genome",
    "identifier": "GCF_000774145.1",
    "organism": "Pseudomonas mediterranea CFBP 5447",
    "title": "Pseudomonas mediterranea CFBP 5447",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Parco Scientifico e tecnologico della Sicilia s.c.p.a.",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000774145.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03112705",
        "wgs_master": "AUPB00000000.1",
        "refseq_category": "na",
        "taxid": "1348058",
        "species_taxid": "183795",
        "organism_name": "Pseudomonas mediterranea CFBP 5447",
        "infraspecific_name": "strain=CFBP 5447",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/11/12",
        "asm_name": "ASM77414v1",
        "asm_submitter": "Parco Scientifico e tecnologico della Sicilia s.c.p.a.",
        "gbrs_paired_asm": "GCA_000774145.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/774/145/GCF_000774145.1_ASM77414v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6319692",
        "genome_size_ungapped": "6308729",
        "gc_percent": "61.000000",
        "replicon_count": "0",
        "scaffold_count": "32",
        "contig_count": "43",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000774145.1-RS_2024_04_29",
        "annotation_date": "2024-04-29",
        "total_gene_count": "5606",
        "protein_coding_gene_count": "5489",
        "non_coding_gene_count": "61",
        "pubmed_id": "25540338"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-11-12",
    "dateModified": "2014-11-12",
    "datePublished": "2014-11-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudomonas mediterranea CFBP 5447"
        ],
        "sample_taxid": [
            "1348058"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Italy"
        ],
        "sample_host_location_id": [],
        "data_size": "1.761 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6319692",
        "Number of Sequences": "32",
        "Longest Sequences (bp)": "1764021",
        "N50 (bp)": "962596",
        "Gap Ratio (%)": "0.173743",
        "GCcontent (%)": "61.2",
        "Number of CDSs": "5533",
        "Average Protein Length": "331.4",
        "Coding Ratio (%)": "87.0",
        "Number of rRNAs": "2",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Pseudomonas mediterranea",
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                "relation_to_type": "type",
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                "total_fragments": 2095,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Pseudomonas mediterranea",
                "strain": "strain=DSM 16733",
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                "species_taxid": 183795,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9709,
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                "total_fragments": 2095,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Pseudomonas corrugata",
                "strain": "strain=DSM 7228",
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                "relation_to_type": "type",
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                "ani": 92.8326,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas corrugata",
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                "accession": "GCA_003699065.1",
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                "species_taxid": 47879,
                "relation_to_type": "type",
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                "ani": 92.8288,
                "matched_fragments": 1737,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas corrugata",
                "strain": "strain=NCPPB2445",
                "accession": "GCA_001411965.1",
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                "relation_to_type": "type",
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                "ani": 92.7729,
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                "total_fragments": 2095,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas rhizophila",
                "strain": "strain=S211",
                "accession": "GCA_003033885.1",
                "taxid": 2045200,
                "species_taxid": 2045200,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.2248,
                "matched_fragments": 1555,
                "total_fragments": 2095,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas pharyngis",
                "strain": "strain=BML-PP036",
                "accession": "GCA_021602345.1",
                "taxid": 2892333,
                "species_taxid": 2892333,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.1583,
                "matched_fragments": 1283,
                "total_fragments": 2095,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas sputi",
                "strain": "strain=BML-PP014",
                "accession": "GCA_021603585.1",
                "taxid": 2892325,
                "species_taxid": 2892325,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.1385,
                "matched_fragments": 1259,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas germanica",
                "strain": "strain=FIT28",
                "accession": "GCA_019614655.1",
                "taxid": 2815720,
                "species_taxid": 2815720,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.26,
                "matched_fragments": 1254,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas brassicae",
                "strain": "strain=MAFF 212427",
                "accession": "GCA_010671725.1",
                "taxid": 2708063,
                "species_taxid": 2708063,
                "relation_to_type": "type",
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                "matched_fragments": 846,
                "total_fragments": 2095,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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            {
                "accession": "GCF_000774145.1",
                "gtdb_species": "s__Pseudomonas_E mediterranea",
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                "matched_fragments": 2090,
                "total_fragments": 2095,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.46",
                "min_intra_species_ani": "99.30",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 8,
                "status": "conclusive"
            },
            {
                "accession": "GCF_007828215.1",
                "gtdb_species": "s__Pseudomonas_E sp007828215",
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                "num_clustered_genomes": 6,
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            },
            {
                "accession": "GCF_014596565.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
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            {
                "accession": "GCF_006227205.1",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
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        ]
    },
    "_bac2feature": {
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        "growth_tmp": 30.0,
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        "facultative_respiration": 0.0,
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        "bacillus_cell_shape": 1.0,
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    },
    "_genome_taxon": [
        "Pseudomonas",
        "mediterranea",
        "CFBP",
        "5447"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}