{ "type": "genome", "identifier": "GCF_000785105.2", "organism": "Lentilactobacillus curieae", "title": "Lentilactobacillus curieae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "East China University of Science and Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000785105.2", "bioproject": "PRJNA224116", "biosample": "SAMN03175170", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1138822", "species_taxid": "1138822", "organism_name": "Lentilactobacillus curieae", "infraspecific_name": "strain=CCTCC M 2011381", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/03/03", "asm_name": "ASM78510v2", "asm_submitter": "East China University of Science and Technology", "gbrs_paired_asm": "GCA_000785105.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/785/105/GCF_000785105.2_ASM78510v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2095860", "genome_size_ungapped": "2095860", "gc_percent": "40.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-05", "total_gene_count": "2057", "protein_coding_gene_count": "1958", "non_coding_gene_count": "80", "pubmed_id": "26021929" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-03-03", "dateModified": "2017-03-03", "datePublished": "2017-03-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Lentilactobacillus curieae" ], "sample_taxid": [ "1138822" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Shanghai" ], "sample_host_location_id": [], "data_size": "0.594 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2095860", "Number of Sequences": "1", "Longest Sequences (bp)": "2095860", "N50 (bp)": "2095860", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.8", "Number of CDSs": "1995", "Average Protein Length": "307.2", "Coding Ratio (%)": "87.7", "Number of rRNAs": "15", "Number of tRNAs": "62", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lentilactobacillus curieae", "strain": "strain=CCTCC M 2011381", "accession": "GCA_000785105.2", "taxid": 1138822, "species_taxid": 1138822, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 698, "total_fragments": 698, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lentilactobacillus kosonis", "strain": "strain=NBRC111893", "accession": "GCA_003864335.1", "taxid": 2810561, "species_taxid": 2810561, "relation_to_type": "type", "validated": true, "ani": 80.237, "matched_fragments": 284, "total_fragments": 698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Apilactobacillus bombintestini", "strain": "strain=BHWM-4", "accession": "GCA_003627035.1", "taxid": 2419772, "species_taxid": 2419772, "relation_to_type": "type", "validated": true, "ani": 80.1858, "matched_fragments": 65, "total_fragments": 698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactiplantibacillus pentosus", "strain": "strain=DSM 20314", "accession": "GCA_003641185.1", "taxid": 1589, "species_taxid": 1589, "relation_to_type": "type", "validated": true, "ani": 79.1315, "matched_fragments": 59, "total_fragments": 698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentilactobacillus hilgardii", "strain": "strain=ATCC 8290", "accession": "GCA_004354795.1", "taxid": 1588, "species_taxid": 1588, "relation_to_type": "type", "validated": true, "ani": 78.9636, "matched_fragments": 104, "total_fragments": 698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Secundilactobacillus oryzae", "strain": "strain=JCM 18671", "accession": "GCA_001311525.1", "taxid": 1202668, "species_taxid": 1202668, "relation_to_type": "type", "validated": true, "ani": 78.6564, "matched_fragments": 55, "total_fragments": 698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Apilactobacillus micheneri", "strain": "strain=Hlig3", "accession": "GCA_002993975.1", "taxid": 1899430, "species_taxid": 1899430, "relation_to_type": "type", "validated": true, "ani": 78.6284, "matched_fragments": 54, "total_fragments": 698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentilactobacillus hilgardii", "strain": "strain=ATCC 8290", "accession": "GCA_000159315.1", "taxid": 1588, "species_taxid": 1588, "relation_to_type": "type", "validated": true, "ani": 78.3537, "matched_fragments": 96, "total_fragments": 698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Secundilactobacillus oryzae", "strain": "strain=SG293", "accession": "GCA_000740055.1", "taxid": 1202668, "species_taxid": 1202668, "relation_to_type": "type", "validated": true, "ani": 78.2778, "matched_fragments": 56, "total_fragments": 698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentilactobacillus otakiensis", "strain": "strain=DSM 19908", "accession": "GCA_001434145.1", "taxid": 481720, "species_taxid": 481720, "relation_to_type": "type", "validated": true, "ani": 78.2257, "matched_fragments": 123, "total_fragments": 698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentilactobacillus otakiensis", "strain": "strain=JCM 15040", "accession": "GCA_000415925.1", "taxid": 481720, "species_taxid": 481720, "relation_to_type": "type", "validated": true, "ani": 78.1983, "matched_fragments": 120, "total_fragments": 698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Secundilactobacillus silagei", "strain": "strain=JCM 19001", "accession": "GCA_001313225.1", "taxid": 1293415, "species_taxid": 1293415, "relation_to_type": "type", "validated": true, "ani": 78.1471, "matched_fragments": 51, "total_fragments": 698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentilactobacillus hilgardii", "strain": "strain=DSM 20176", "accession": "GCA_001434655.1", "taxid": 1588, "species_taxid": 1588, "relation_to_type": "type", "validated": true, "ani": 78.1469, "matched_fragments": 96, "total_fragments": 698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentilactobacillus sunkii", "strain": "strain=DSM 19904", "accession": "GCA_001435575.1", "taxid": 481719, "species_taxid": 481719, "relation_to_type": "type", "validated": true, "ani": 77.9779, "matched_fragments": 120, "total_fragments": 698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Apilactobacillus timberlakei", "strain": "strain=HV_12", "accession": "GCA_002993965.1", "taxid": 2008380, "species_taxid": 2008380, "relation_to_type": "type", "validated": true, "ani": 77.8523, "matched_fragments": 56, "total_fragments": 698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentilactobacillus diolivorans", "strain": "strain=DSM 14421", "accession": "GCA_001434255.1", "taxid": 179838, "species_taxid": 179838, "relation_to_type": "type", "validated": true, "ani": 77.6916, "matched_fragments": 120, "total_fragments": 698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Secundilactobacillus angelensis", "strain": "strain=HBUAS51383", "accession": "GCA_012641075.1", "taxid": 2722706, "species_taxid": 2722706, "relation_to_type": "type", "validated": true, "ani": 77.6096, "matched_fragments": 59, "total_fragments": 698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactiplantibacillus pentosus", "strain": "strain=DSM 20314", "accession": "GCA_001433755.1", "taxid": 1589, "species_taxid": 1589, "relation_to_type": "type", "validated": true, "ani": 77.5415, "matched_fragments": 50, "total_fragments": 698, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000785105.2", "gtdb_species": "s__Lentilactobacillus curieae", "ani": 100.0, "matched_fragments": 698, "total_fragments": 698, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003864335.1", "gtdb_species": "s__Lentilactobacillus curieae_A", "ani": 80.237, "matched_fragments": 284, "total_fragments": 698, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003627035.1", "gtdb_species": "s__Apilactobacillus bombintestini", "ani": 80.1673, "matched_fragments": 64, "total_fragments": 698, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Apilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003641185.1", "gtdb_species": "s__Lactiplantibacillus pentosus", "ani": 79.1265, "matched_fragments": 59, "total_fragments": 698, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactiplantibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.89", "min_intra_species_ani": "96.07", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.86", "num_clustered_genomes": 56, "status": "-" }, { "accession": "GCF_002993975.1", "gtdb_species": "s__Apilactobacillus micheneri", "ani": 78.6324, "matched_fragments": 53, "total_fragments": 698, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Apilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.16", "min_intra_species_ani": "96.49", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 21, "status": "-" }, { "accession": "GCF_000159315.1", "gtdb_species": "s__Lentilactobacillus hilgardii", "ani": 78.3537, "matched_fragments": 96, "total_fragments": 698, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.37", "min_intra_species_ani": "96.88", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCF_000740055.1", "gtdb_species": "s__Secundilactobacillus oryzae", "ani": 78.2778, "matched_fragments": 56, "total_fragments": 698, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Secundilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.88", "min_intra_species_ani": "99.88", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001434145.1", "gtdb_species": "s__Lentilactobacillus otakiensis", "ani": 78.2257, "matched_fragments": 123, "total_fragments": 698, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.91", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_019061365.1", "gtdb_species": "s__Lentilactobacillus sp019061365", "ani": 78.0375, "matched_fragments": 109, "total_fragments": 698, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.43", "min_intra_species_ani": "99.43", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002157585.1", "gtdb_species": "s__Lentilactobacillus parakefiri", "ani": 78.0063, "matched_fragments": 101, "total_fragments": 698, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.70", "min_intra_species_ani": "99.39", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001435575.1", "gtdb_species": "s__Lentilactobacillus sunkii", "ani": 77.9779, "matched_fragments": 120, "total_fragments": 698, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.44", "min_intra_species_ani": "96.44", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000463075.2", "gtdb_species": "s__Lactiplantibacillus plantarum_A", "ani": 77.8618, "matched_fragments": 50, "total_fragments": 698, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactiplantibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.70", "min_intra_species_ani": "97.70", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002993965.1", "gtdb_species": "s__Apilactobacillus timberlakei", "ani": 77.8523, "matched_fragments": 56, "total_fragments": 698, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Apilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.96", "min_intra_species_ani": "98.30", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.87", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_001434135.1", "gtdb_species": "s__Lentilactobacillus kisonensis", "ani": 77.7992, "matched_fragments": 110, "total_fragments": 698, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.70", "min_intra_species_ani": "99.52", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001434255.1", "gtdb_species": "s__Lentilactobacillus diolivorans", "ani": 77.6916, "matched_fragments": 120, "total_fragments": 698, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.05", "min_intra_species_ani": "98.10", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_012641075.1", "gtdb_species": "s__Secundilactobacillus sp012641075", "ani": 77.5986, "matched_fragments": 60, "total_fragments": 698, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Secundilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002217925.1", "gtdb_species": "s__Secundilactobacillus mixtipabuli", "ani": 77.135, "matched_fragments": 61, "total_fragments": 698, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Secundilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002418005.1", "gtdb_species": "s__Lentilactobacillus sp002418005", "ani": 77.018, "matched_fragments": 85, "total_fragments": 698, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.90", "min_intra_species_ani": "99.90", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Lentilactobacillus", "curieae" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }