{ "type": "genome", "identifier": "GCF_000787755.1", "organism": "Streptacidiphilus albus", "title": "Streptacidiphilus albus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation Biological Resource Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000787755.1", "bioproject": "PRJNA224116", "biosample": "SAMD00022872", "wgs_master": "BBPL00000000.1", "refseq_category": "na", "taxid": "105425", "species_taxid": "105425", "organism_name": "Streptacidiphilus albus", "infraspecific_name": "strain=NBRC 100918", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/11/20", "asm_name": "ASM78775v1", "asm_submitter": "National Institute of Technology and Evaluation Biological Resource Center", "gbrs_paired_asm": "GCA_000787755.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/787/755/GCF_000787755.1_ASM78775v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9677773", "genome_size_ungapped": "9652273", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "155", "contig_count": "155", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000787755.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "8680", "protein_coding_gene_count": "8371", "non_coding_gene_count": "88", "pubmed_id": "25573937" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-11-20", "dateModified": "2014-11-20", "datePublished": "2014-11-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptacidiphilus albus" ], "sample_taxid": [ "105425" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "NA" ], "sample_host_location_id": [], "data_size": "2.583 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9677773", "Number of Sequences": "155", "Longest Sequences (bp)": "461060", "N50 (bp)": "132365", "Gap Ratio (%)": "0.263490", "GCcontent (%)": "71.9", "Number of CDSs": "8639", "Average Protein Length": "318.0", "Coding Ratio (%)": "85.2", "Number of rRNAs": "0", "Number of tRNAs": "114", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptacidiphilus albus", "strain": "strain=NBRC 100918", "accession": "GCA_000787755.1", "taxid": 105425, "species_taxid": 105425, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3124, "total_fragments": 3140, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptacidiphilus albus", "strain": "strain=JL83", "accession": "GCA_000744705.1", "taxid": 105425, "species_taxid": 105425, "relation_to_type": "type", "validated": true, "ani": 99.9891, "matched_fragments": 3132, "total_fragments": 3140, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptacidiphilus carbonis", "strain": "strain=NBRC 100919", "accession": "GCA_000787775.1", "taxid": 105422, "species_taxid": 105422, "relation_to_type": "type", "validated": true, "ani": 83.2509, "matched_fragments": 1453, "total_fragments": 3140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptacidiphilus fuscans", "strain": "strain=NEAU-YB345", "accession": "GCA_015690355.1", "taxid": 2789292, "species_taxid": 2789292, "relation_to_type": "type", "validated": true, "ani": 81.3473, "matched_fragments": 1418, "total_fragments": 3140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptacidiphilus rugosus", "strain": "strain=AM-16", "accession": "GCA_000744655.1", "taxid": 405783, "species_taxid": 405783, "relation_to_type": "type", "validated": true, "ani": 81.3365, "matched_fragments": 1416, "total_fragments": 3140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptacidiphilus pinicola", "strain": "strain=MMS16-CNU450", "accession": "GCA_003258295.1", "taxid": 2219663, "species_taxid": 2219663, "relation_to_type": "type", "validated": true, "ani": 81.0625, "matched_fragments": 1330, "total_fragments": 3140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptacidiphilus melanogenes", "strain": "strain=NBRC 103184", "accession": "GCA_000787835.1", "taxid": 411235, "species_taxid": 411235, "relation_to_type": "type", "validated": true, "ani": 80.8834, "matched_fragments": 1432, "total_fragments": 3140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptacidiphilus jiangxiensis", "strain": "strain=NBRC 100920", "accession": "GCA_000787795.1", "taxid": 235985, "species_taxid": 235985, "relation_to_type": "type", "validated": true, "ani": 80.8558, "matched_fragments": 1489, "total_fragments": 3140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptacidiphilus jiangxiensis", "strain": "strain=CGMCC 4.1857", "accession": "GCA_900109465.1", "taxid": 235985, "species_taxid": 235985, "relation_to_type": "type", "validated": true, "ani": 80.8288, "matched_fragments": 1494, "total_fragments": 3140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peterkaempfera bronchialis", "strain": "strain=DSM 106435", "accession": "GCA_003258605.2", "taxid": 2126346, "species_taxid": 2126346, "relation_to_type": "type", "validated": true, "ani": 80.2636, "matched_fragments": 1190, "total_fragments": 3140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peterkaempfera griseoplana", "strain": "strain=NRRL B-3064", "accession": "GCA_001418575.1", "taxid": 66896, "species_taxid": 66896, "relation_to_type": "type", "validated": true, "ani": 80.2487, "matched_fragments": 1052, "total_fragments": 3140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora indigofera", "strain": "strain=JCM 4646", "accession": "GCA_014655955.1", "taxid": 67307, "species_taxid": 67307, "relation_to_type": "type", "validated": true, "ani": 80.1701, "matched_fragments": 1369, "total_fragments": 3140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora humi", "strain": "strain=RB6PN24", "accession": "GCA_020907985.1", "taxid": 2893891, "species_taxid": 2893891, "relation_to_type": "type", "validated": true, "ani": 80.0959, "matched_fragments": 1230, "total_fragments": 3140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora purpeofusca", "strain": "strain=NRRL B-1817", "accession": "GCA_000718025.1", "taxid": 67352, "species_taxid": 67352, "relation_to_type": "type", "validated": true, "ani": 79.9813, "matched_fragments": 1362, "total_fragments": 3140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces thermodiastaticus", "strain": "strain=DSM 40573", "accession": "GCA_021394575.1", "taxid": 44061, "species_taxid": 44061, "relation_to_type": "type", "validated": true, "ani": 78.7845, "matched_fragments": 914, "total_fragments": 3140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rhizosphaericola", "strain": "strain=1AS2c", "accession": "GCA_004794175.1", "taxid": 2564098, "species_taxid": 2564098, "relation_to_type": "type", "validated": true, "ani": 78.6791, "matched_fragments": 911, "total_fragments": 3140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces blattellae", "strain": "strain=TRM63209", "accession": "GCA_009709555.1", "taxid": 2569855, "species_taxid": 2569855, "relation_to_type": "type", "validated": true, "ani": 78.1737, "matched_fragments": 915, "total_fragments": 3140, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000744705.1", "gtdb_species": "s__Streptacidiphilus albus", "ani": 99.9891, "matched_fragments": 3132, "total_fragments": 3140, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptacidiphilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_014084125.1", "gtdb_species": "s__Streptacidiphilus sp014084125", "ani": 85.4521, "matched_fragments": 1648, "total_fragments": 3140, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptacidiphilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014084105.1", "gtdb_species": "s__Streptacidiphilus sp014084105", "ani": 84.8665, "matched_fragments": 1777, "total_fragments": 3140, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptacidiphilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014284505.1", "gtdb_species": "s__Streptacidiphilus sp014284505", "ani": 84.2254, "matched_fragments": 1754, "total_fragments": 3140, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptacidiphilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000719095.1", "gtdb_species": "s__Streptacidiphilus jeojiense", "ani": 83.3194, "matched_fragments": 1538, "total_fragments": 3140, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptacidiphilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000787775.1", "gtdb_species": "s__Streptacidiphilus carbonis", "ani": 83.2495, "matched_fragments": 1451, "total_fragments": 3140, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptacidiphilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004365705.1", "gtdb_species": "s__Streptacidiphilus sp004365705", "ani": 83.1905, "matched_fragments": 1479, "total_fragments": 3140, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptacidiphilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003751325.1", "gtdb_species": "s__Streptacidiphilus sp003751325", "ani": 83.1348, "matched_fragments": 1570, "total_fragments": 3140, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptacidiphilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000744655.1", "gtdb_species": "s__Streptacidiphilus rugosus", "ani": 81.3801, "matched_fragments": 1409, "total_fragments": 3140, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptacidiphilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015690355.1", "gtdb_species": "s__Streptacidiphilus fuscans", "ani": 81.3075, "matched_fragments": 1423, "total_fragments": 3140, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptacidiphilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003258295.1", "gtdb_species": "s__Streptacidiphilus pinicola", "ani": 81.0564, "matched_fragments": 1331, "total_fragments": 3140, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptacidiphilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000787835.1", "gtdb_species": "s__Streptacidiphilus melanogenes", "ani": 80.9, "matched_fragments": 1428, "total_fragments": 3140, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptacidiphilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900109465.1", "gtdb_species": "s__Streptacidiphilus jiangxiensis", "ani": 80.8512, "matched_fragments": 1489, "total_fragments": 3140, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptacidiphilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.155, "cell_length": 0.0, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 30.0, "optimum_ph": null, "genome_size": 9796433.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": 1.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Streptacidiphilus", "albus" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }