{ "type": "genome", "identifier": "GCF_000797445.1", "organism": "Lacinutrix jangbogonensis", "title": "Lacinutrix jangbogonensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "KORIA POLAR RESEARCH INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000797445.1", "bioproject": "PRJNA224116", "biosample": "SAMN02665270", "wgs_master": "JSWF00000000.1", "refseq_category": "reference genome", "taxid": "1469557", "species_taxid": "1469557", "organism_name": "Lacinutrix jangbogonensis", "infraspecific_name": "strain=PAMC 27137", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/12/04", "asm_name": "ASM79744v1", "asm_submitter": "KORIA POLAR RESEARCH INSTITUTE", "gbrs_paired_asm": "GCA_000797445.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/797/445/GCF_000797445.1_ASM79744v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4017534", "genome_size_ungapped": "4017534", "gc_percent": "32.000000", "replicon_count": "0", "scaffold_count": "46", "contig_count": "46", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000797445.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "3583", "protein_coding_gene_count": "3468", "non_coding_gene_count": "51", "pubmed_id": "25038886" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-12-04", "dateModified": "2014-12-04", "datePublished": "2014-12-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Lacinutrix jangbogonensis" ], "sample_taxid": [ "1469557" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica" ], "sample_host_location_id": [], "data_size": "1.108 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4017534", "Number of Sequences": "46", "Longest Sequences (bp)": "370178", "N50 (bp)": "181212", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "32.2", "Number of CDSs": "3525", "Average Protein Length": "329.6", "Coding Ratio (%)": "86.8", "Number of rRNAs": "5", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lacinutrix jangbogonensis", "strain": "strain=PAMC 27137", "accession": "GCA_000797445.1", "taxid": 1469557, "species_taxid": 1469557, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1304, 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"below_threshold" }, { "organism_name": "Olleya aquimaris", "strain": "strain=DSM 24464", "accession": "GCA_003259525.1", "taxid": 639310, "species_taxid": 639310, "relation_to_type": "type", "validated": true, "ani": 78.545, "matched_fragments": 388, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olleya namhaensis", "strain": "strain=DSM 28881", "accession": "GCA_900114005.1", "taxid": 1144750, "species_taxid": 1144750, "relation_to_type": "type", "validated": true, "ani": 78.427, "matched_fragments": 405, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olleya marilimosa", "strain": "strain=CAM030", "accession": "GCA_000518485.1", "taxid": 272164, "species_taxid": 272164, "relation_to_type": "type", "validated": true, "ani": 78.2023, "matched_fragments": 412, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesoflavibacter 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"Winogradskyella psychrotolerans", "strain": "strain=RS-3", "accession": "GCA_000427335.1", "taxid": 1344585, "species_taxid": 1344585, "relation_to_type": "type", "validated": true, "ani": 77.9628, "matched_fragments": 288, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=RU-4-M-4", "accession": "GCA_007559325.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 77.8657, "matched_fragments": 309, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella litoriviva", "strain": "strain=KMM6491", "accession": "GCA_013249065.1", "taxid": 1220182, "species_taxid": 1220182, "relation_to_type": "type", "validated": true, "ani": 77.8561, "matched_fragments": 302, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": 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2729136, "species_taxid": 2729136, "relation_to_type": "type", "validated": true, "ani": 77.1935, "matched_fragments": 213, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera neustonica", "strain": "strain=JCM19743", "accession": "GCA_002895005.1", "taxid": 1445657, "species_taxid": 1445657, "relation_to_type": "type", "validated": true, "ani": 77.0796, "matched_fragments": 155, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella flava", "strain": "strain=T58", "accession": "GCA_004310325.1", "taxid": 2527939, "species_taxid": 2527939, "relation_to_type": "type", "validated": true, "ani": 77.0492, "matched_fragments": 182, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000797445.1", "gtdb_species": 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