{ "type": "genome", "identifier": "GCF_000802245.2", "organism": "Streptomyces pluripotens", "title": "Streptomyces pluripotens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Malaya", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000802245.2", "bioproject": "PRJNA224116", "biosample": "SAMN03070117", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1355015", "species_taxid": "1355015", "organism_name": "Streptomyces pluripotens", "infraspecific_name": "strain=MUSC 135", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/05/09", "asm_name": "ASM80224v2", "asm_submitter": "University of Malaya", "gbrs_paired_asm": "GCA_000802245.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/802/245/GCF_000802245.2_ASM80224v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7346075", "genome_size_ungapped": "7346075", "gc_percent": "70.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000802245.2-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "6464", "protein_coding_gene_count": "6141", "non_coding_gene_count": "91", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-05-09", "dateModified": "2017-05-09", "datePublished": "2017-05-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces pluripotens" ], "sample_taxid": [ "1355015" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Malaysia" ], "sample_host_location_id": [], "data_size": "1.993 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 28.0, "max": 28.0 }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7346075", "Number of Sequences": "1", "Longest Sequences (bp)": "7346075", "N50 (bp)": "7346075", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.9", "Number of CDSs": "6552", "Average Protein Length": "322.4", "Coding Ratio (%)": "86.3", "Number of rRNAs": "18", "Number of tRNAs": "76", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces fodineus", "strain": "strain=TW1S1", "accession": "GCA_001735805.1", "taxid": 1904616, "species_taxid": 1904616, "relation_to_type": "type", "validated": true, "ani": 86.4666, "matched_fragments": 1712, "total_fragments": 2448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces filipinensis", "strain": "strain=JCM 4369", "accession": "GCA_014649495.1", "taxid": 66887, "species_taxid": 66887, "relation_to_type": "type", "validated": true, "ani": 86.4161, "matched_fragments": 1688, "total_fragments": 2448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces corchorusii", "strain": "strain=DSM 40340", "accession": "GCA_001514055.1", "taxid": 1903, "species_taxid": 1903, "relation_to_type": "type", "validated": true, "ani": 86.4004, "matched_fragments": 1662, "total_fragments": 2448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces olivaceoviridis", "strain": "strain=JCM 4499", "accession": "GCA_014650115.1", "taxid": 1921, "species_taxid": 1921, "relation_to_type": "type", "validated": true, "ani": 86.385, "matched_fragments": 1685, "total_fragments": 2448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces barringtoniae", "strain": "strain=JA03", "accession": "GCA_020819595.1", "taxid": 2892029, "species_taxid": 2892029, "relation_to_type": "type", "validated": true, "ani": 86.3772, "matched_fragments": 1673, "total_fragments": 2448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces durhamensis", "strain": "strain=NRRL B-3309", "accession": "GCA_000725475.1", "taxid": 68194, "species_taxid": 68194, "relation_to_type": "type", "validated": true, "ani": 86.3635, "matched_fragments": 1639, "total_fragments": 2448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces echinatus", "strain": "strain=CECT 3313", "accession": "GCA_014203595.1", "taxid": 67293, "species_taxid": 67293, "relation_to_type": "type", "validated": true, "ani": 86.3567, "matched_fragments": 1673, "total_fragments": 2448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces echinatus", "strain": "strain=JCM4574", "accession": "GCA_020400685.1", "taxid": 67293, "species_taxid": 67293, "relation_to_type": "type", "validated": true, "ani": 86.3235, "matched_fragments": 1634, "total_fragments": 2448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces canarius", "strain": "strain=JCM 4733", "accession": "GCA_014650735.1", "taxid": 285453, "species_taxid": 285453, "relation_to_type": "type", "validated": true, "ani": 86.2363, "matched_fragments": 1682, "total_fragments": 2448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces spinosus", "strain": "strain=SBTS01", "accession": "GCA_020400655.1", "taxid": 2872623, "species_taxid": 2872623, "relation_to_type": "type", "validated": true, "ani": 86.1433, "matched_fragments": 1658, "total_fragments": 2448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces yokosukanensis", "strain": "strain=DSM 40224", "accession": "GCA_001514035.1", "taxid": 67386, "species_taxid": 67386, "relation_to_type": "type", "validated": true, "ani": 86.0146, "matched_fragments": 1708, "total_fragments": 2448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces alanosinicus", "strain": "strain=JCM 4714", "accession": "GCA_014650595.1", "taxid": 68171, "species_taxid": 68171, "relation_to_type": "type", "validated": true, "ani": 85.8923, "matched_fragments": 1659, "total_fragments": 2448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces eurythermus", "strain": "strain=JCM 4206", "accession": "GCA_014649115.1", "taxid": 42237, "species_taxid": 42237, "relation_to_type": "type", "validated": true, "ani": 85.7872, "matched_fragments": 1560, "total_fragments": 2448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rubradiris", "strain": "strain=NBRC 14000", "accession": "GCA_016860525.1", "taxid": 285531, "species_taxid": 285531, 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true, "ani": 85.6499, "matched_fragments": 1682, "total_fragments": 2448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces brasiliensis", "strain": "strain=JCM 3086", "accession": "GCA_014647875.1", "taxid": 1954, "species_taxid": 1954, "relation_to_type": "type", "validated": true, "ani": 84.1422, "matched_fragments": 1523, "total_fragments": 2448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces shenzhenensis subsp. oryzicola", "strain": "strain=W18L9", "accession": "GCA_013870495.1", "taxid": 2749088, "species_taxid": 943815, "relation_to_type": "type", "validated": true, "ani": 84.0145, "matched_fragments": 1229, "total_fragments": 2448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces shenzhenensis", "strain": "strain=DSM 42034", "accession": "GCA_021462265.1", "taxid": 943815, "species_taxid": 943815, "relation_to_type": "type", "validated": true, "ani": 83.8584, 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