{ "type": "genome", "identifier": "GCF_000803025.1", "organism": "Anaerovibrio lipolyticus", "title": "Anaerovibrio lipolyticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Aberystwyth University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000803025.1", "bioproject": "PRJNA224116", "biosample": "SAMN03142498", "wgs_master": "JSCE00000000.1", "refseq_category": "na", "taxid": "82374", "species_taxid": "82374", "organism_name": "Anaerovibrio lipolyticus", "infraspecific_name": "strain=5S", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/12/17", "asm_name": "Alipo1.0", "asm_submitter": "Aberystwyth University", "gbrs_paired_asm": "GCA_000803025.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/803/025/GCF_000803025.1_Alipo1.0", "excluded_from_refseq": "na", 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"United Kingdom: Scotland" ], "sample_host_location_id": [], "data_size": "0.807 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 6.71, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2828534", "Number of Sequences": "269", "Longest Sequences (bp)": "64976", "N50 (bp)": "18929", "Gap Ratio (%)": "0.000035", "GCcontent (%)": "43.3", "Number of CDSs": "2506", "Average Protein Length": "300.1", "Coding Ratio (%)": "79.8", "Number of rRNAs": "6", "Number of tRNAs": "58", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Anaerovibrio lipolyticus", "strain": "strain=DSM 3074", "accession": "GCA_900141865.1", "taxid": 82374, "species_taxid": 82374, "relation_to_type": "type", "validated": true, "ani": 98.5403, "matched_fragments": 733, "total_fragments": 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": null, "genome_size": 2780232.5, "gc_content": 43.28, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": null, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Anaerovibrio", "lipolyticus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }