{ "type": "genome", "identifier": "GCF_000803645.1", "organism": "Sphingopyxis fribergensis", "title": "Sphingopyxis fribergensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bielefeld University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000803645.1", "bioproject": "PRJNA224116", "biosample": "SAMN02872841", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1515612", "species_taxid": "1515612", "organism_name": "Sphingopyxis fribergensis", "infraspecific_name": "strain=Kp5.2", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/12/18", "asm_name": "ASM80364v1", "asm_submitter": "Bielefeld University", "gbrs_paired_asm": "GCA_000803645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/803/645/GCF_000803645.1_ASM80364v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5202172", "genome_size_ungapped": "5202172", "gc_percent": "64.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000803645.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "4968", "protein_coding_gene_count": "4863", "non_coding_gene_count": "51", "pubmed_id": "26040579" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-12-18", "dateModified": "2014-12-18", "datePublished": "2014-12-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingopyxis fribergensis" ], "sample_taxid": [ "1515612" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Saxony" ], "sample_host_location_id": [], "data_size": "1.435 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5202172", "Number of Sequences": "2", "Longest Sequences (bp)": "4993584", "N50 (bp)": "4993584", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.8", "Number of CDSs": "4930", "Average Protein Length": "318.1", "Coding Ratio (%)": "90.4", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingopyxis fribergensis", "strain": "strain=Kp5.2", "accession": "GCA_000803645.1", "taxid": 1515612, "species_taxid": 1515612, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1731, "total_fragments": 1733, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Sphingopyxis italica", "strain": "strain=DSM 25229", "accession": "GCA_011926545.1", "taxid": 1129133, "species_taxid": 1129133, "relation_to_type": "type", "validated": true, "ani": 87.0477, "matched_fragments": 1030, "total_fragments": 1733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis macrogoltabida", "strain": "strain=203", "accession": "GCA_001314325.1", "taxid": 33050, "species_taxid": 33050, "relation_to_type": "type", "validated": true, "ani": 85.6185, "matched_fragments": 1020, "total_fragments": 1733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis microcysteis", "strain": "strain=Z10-6", "accession": "GCA_012274265.1", "taxid": 2484145, "species_taxid": 2484145, "relation_to_type": "type", "validated": true, "ani": 85.3078, "matched_fragments": 860, "total_fragments": 1733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis panaciterrae", "strain": "strain=DSM 27164", "accession": "GCA_011762125.1", "taxid": 363841, "species_taxid": 363841, "relation_to_type": "type", "validated": true, "ani": 85.0043, "matched_fragments": 911, "total_fragments": 1733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis bauzanensis", "strain": "strain=CGMCC 1.8959", "accession": "GCA_014645635.1", "taxid": 651663, "species_taxid": 651663, "relation_to_type": "type", "validated": true, "ani": 84.8732, "matched_fragments": 899, "total_fragments": 1733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis alaskensis", "strain": "strain=RB2256", "accession": "GCA_000013985.1", "taxid": 117207, "species_taxid": 117207, "relation_to_type": "type", "validated": true, "ani": 84.8636, "matched_fragments": 854, "total_fragments": 1733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis bauzanensis", "strain": "strain=DSM 22271", "accession": "GCA_002205675.1", "taxid": 651663, "species_taxid": 651663, "relation_to_type": "type", "validated": true, "ani": 84.8029, "matched_fragments": 924, "total_fragments": 1733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis lindanitolerans", "strain": "strain=WS5A3p", "accession": "GCA_002993885.1", "taxid": 2054227, "species_taxid": 2054227, "relation_to_type": "type", "validated": true, "ani": 84.4501, "matched_fragments": 843, "total_fragments": 1733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis witflariensis", "strain": "strain=DSM 14551", "accession": "GCA_002205635.1", "taxid": 173675, "species_taxid": 173675, "relation_to_type": "type", "validated": true, "ani": 84.247, "matched_fragments": 885, "total_fragments": 1733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingosinicella ginsenosidimutans", "strain": "strain=BS-11", 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