{ "type": "genome", "identifier": "GCF_000812665.2", "organism": "Falsihalocynthiibacter arcticus", "title": "Falsihalocynthiibacter arcticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea Polar Research Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000812665.2", "bioproject": "PRJNA224116", "biosample": "SAMN03252591", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1579316", "species_taxid": "1579316", "organism_name": "Falsihalocynthiibacter arcticus", "infraspecific_name": "strain=PAMC 20958", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/02/25", "asm_name": "ASM81266v2", "asm_submitter": "Korea Polar Research Institute", "gbrs_paired_asm": "GCA_000812665.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/812/665/GCF_000812665.2_ASM81266v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4376120", "genome_size_ungapped": "4376120", "gc_percent": "53.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-03", "total_gene_count": "4306", "protein_coding_gene_count": "4006", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-02-25", "dateModified": "2016-02-25", "datePublished": "2016-02-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Falsihalocynthiibacter arcticus" ], "sample_taxid": [ "1579316" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Norway: Svalbard" ], "sample_host_location_id": [], "data_size": "1.245 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4376120", "Number of Sequences": "2", "Longest Sequences (bp)": "4329554", "N50 (bp)": "4329554", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.2", "Number of CDSs": "4398", "Average Protein Length": "288.2", "Coding Ratio (%)": "86.9", "Number of rRNAs": "9", "Number of tRNAs": "45", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Falsihalocynthiibacter arcticus", "strain": "strain=PAMC 20958", "accession": "GCA_000812665.2", "taxid": 1579316, "species_taxid": 1579316, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1457, "total_fragments": 1458, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Leisingera aquimarina", "strain": "strain=DSM 24565", "accession": "GCA_000473165.1", "taxid": 476529, "species_taxid": 476529, "relation_to_type": "type", "validated": true, "ani": 77.5647, "matched_fragments": 90, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cochlodiniinecator piscidefendens", "strain": "strain=M26A2M", "accession": "GCA_011326755.1", "taxid": 2715756, "species_taxid": 2715756, "relation_to_type": "type", "validated": true, "ani": 77.3018, "matched_fragments": 82, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Profundibacter amoris", "strain": "strain=BAR1", "accession": "GCA_003544895.1", "taxid": 2171755, "species_taxid": 2171755, "relation_to_type": "type", "validated": true, "ani": 77.1233, "matched_fragments": 106, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudosulfitobacter pseudonitzschiae", "strain": "strain=DSM 26824", "accession": "GCA_900129395.1", "taxid": 1402135, "species_taxid": 1402135, "relation_to_type": "type", "validated": true, "ani": 77.0865, "matched_fragments": 93, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pacificibacter maritimus", "strain": "strain=DSM 104731", "accession": "GCA_003814915.1", "taxid": 762213, "species_taxid": 762213, "relation_to_type": "type", "validated": true, "ani": 77.0435, "matched_fragments": 85, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litorivita pollutaquae", "strain": "strain=FSX-11", "accession": "GCA_003205515.1", "taxid": 2200892, "species_taxid": 2200892, "relation_to_type": "type", "validated": true, "ani": 77.0302, "matched_fragments": 103, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudosulfitobacter pseudonitzschiae", "strain": "strain=H3", "accession": "GCA_000712315.1", "taxid": 1402135, "species_taxid": 1402135, "relation_to_type": "type", "validated": true, "ani": 77.019, "matched_fragments": 91, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zongyanglinia marina", "strain": "strain=DSW4-44", "accession": "GCA_005771405.1", "taxid": 2578117, "species_taxid": 2578117, "relation_to_type": "type", "validated": true, "ani": 77.0138, "matched_fragments": 99, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Octadecabacter temperatus", "strain": "strain=SB1", "accession": "GCA_001187845.1", "taxid": 1458307, "species_taxid": 1458307, "relation_to_type": "type", "validated": true, "ani": 77.0036, "matched_fragments": 92, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudophaeobacter arcticus", "strain": "strain=DSM 23566", "accession": "GCA_000473205.1", "taxid": 385492, "species_taxid": 385492, "relation_to_type": "type", "validated": true, "ani": 76.9937, "matched_fragments": 103, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Octadecabacter temperatus", "strain": "strain=DSM 26878", "accession": "GCA_900142425.1", "taxid": 1458307, "species_taxid": 1458307, "relation_to_type": "type", "validated": true, "ani": 76.9205, "matched_fragments": 93, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zongyanglinia huanghaiensis", "strain": "strain=CY05", "accession": "GCA_009753675.1", "taxid": 2682100, "species_taxid": 2682100, "relation_to_type": "type", "validated": true, "ani": 76.7233, "matched_fragments": 75, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter mediterraneus", "strain": "strain=DSM 12244", "accession": "GCA_003054325.1", "taxid": 83219, "species_taxid": 83219, "relation_to_type": "type", "validated": true, "ani": 76.6954, "matched_fragments": 93, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius litorisediminis", "strain": "strain=CECT 8287", "accession": "GCA_900172295.1", "taxid": 1312363, "species_taxid": 1312363, "relation_to_type": "type", "validated": true, "ani": 76.6317, "matched_fragments": 72, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius autumnalis", "strain": "strain=CECT 5118", "accession": "GCA_001458255.1", "taxid": 2072972, "species_taxid": 2072972, "relation_to_type": "type", "validated": true, "ani": 76.5925, "matched_fragments": 109, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagicola litoralis", "strain": "strain=CL-ES2", "accession": "GCA_005518135.1", "taxid": 420403, "species_taxid": 420403, "relation_to_type": "type", "validated": true, "ani": 76.4946, "matched_fragments": 107, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actibacterium mucosum", "strain": "strain=KCTC 23349", "accession": "GCA_000647975.1", "taxid": 1087332, "species_taxid": 1087332, "relation_to_type": "type", "validated": true, "ani": 76.4587, "matched_fragments": 97, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cognatiyoonia koreensis", "strain": "strain=DSM 17925", "accession": "GCA_900109295.1", "taxid": 364200, "species_taxid": 364200, "relation_to_type": "type", "validated": true, "ani": 76.4521, "matched_fragments": 62, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius mangrovi", "strain": "strain=GS-10", "accession": "GCA_009857745.1", "taxid": 2692236, "species_taxid": 2692236, "relation_to_type": "type", "validated": true, "ani": 76.1279, "matched_fragments": 85, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius aquimarinus", "strain": "strain=KMM 8518", "accession": "GCA_018219815.1", "taxid": 2785917, "species_taxid": 2785917, "relation_to_type": "type", "validated": true, "ani": 75.9945, "matched_fragments": 65, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leisingera aquaemixtae", "strain": "strain=CECT 8399", "accession": "GCA_001458395.1", "taxid": 1396826, "species_taxid": 1396826, "relation_to_type": "type", "validated": true, "ani": 75.8915, "matched_fragments": 67, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger marinus", "strain": "strain=DSM 26424", "accession": "GCA_900100085.1", "taxid": 555512, "species_taxid": 555512, "relation_to_type": "type", "validated": true, "ani": 75.8841, "matched_fragments": 69, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Puniceibacterium confluentis", "strain": "strain=JSSK-17", "accession": "GCA_007923445.1", "taxid": 1958944, "species_taxid": 1958944, "relation_to_type": "type", "validated": true, "ani": 75.8343, "matched_fragments": 64, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000812665.2", "gtdb_species": "s__Halocynthiibacter_B arcticus", "ani": 100.0, "matched_fragments": 1457, "total_fragments": 1458, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Halocynthiibacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003352085.1", "gtdb_species": "s__Sulfitobacter sp003352085", "ani": 78.3537, "matched_fragments": 122, "total_fragments": 1458, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Sulfitobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000812685.1", "gtdb_species": "s__Halocynthiibacter namhaensis", "ani": 77.2863, "matched_fragments": 109, "total_fragments": 1458, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Halocynthiibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900115105.1", "gtdb_species": "s__Yoonia tamlensis", "ani": 77.0755, "matched_fragments": 105, "total_fragments": 1458, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Yoonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003814915.1", "gtdb_species": "s__Pacificibacter maritimus", "ani": 77.0451, "matched_fragments": 85, "total_fragments": 1458, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pacificibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000169395.1", "gtdb_species": "s__HTCC2150 sp000169395", "ani": 76.9271, "matched_fragments": 93, "total_fragments": 1458, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__HTCC2150", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002933395.1", "gtdb_species": "s__Yoonia maritima_A", "ani": 76.8587, "matched_fragments": 98, "total_fragments": 1458, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Yoonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002340515.1", "gtdb_species": "s__Aliiroseovarius sp002340515", "ani": 76.8498, "matched_fragments": 98, "total_fragments": 1458, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Aliiroseovarius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000011965.2", "gtdb_species": "s__Ruegeria_B pomeroyi", "ani": 76.7513, "matched_fragments": 74, "total_fragments": 1458, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Ruegeria_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.92", "mean_intra_species_af": 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"num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900143615.1", "gtdb_species": "s__Shimia sp900143615", "ani": 76.5718, "matched_fragments": 105, "total_fragments": 1458, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Shimia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016123485.1", "gtdb_species": "s__Halocynthiibacter sp016123485", "ani": 76.5655, "matched_fragments": 91, "total_fragments": 1458, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Halocynthiibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014643735.1", "gtdb_species": "s__Amylibacter cionae", "ani": 76.5655, "matched_fragments": 91, "total_fragments": 1458, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Amylibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900109295.1", "gtdb_species": "s__Cognatiyoonia koreensis", "ani": 76.486, "matched_fragments": 61, "total_fragments": 1458, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Cognatiyoonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": 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"growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Falsihalocynthiibacter", "arcticus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }