# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_6	LOCUS_00060	sequence05:538..1281(+)	partial			WP_015038907.1	ISL3-like element IS1001 family transposase	100.0	61.1	58.9
MGA_29	LOCUS_00260	sequence11:4427..4837(+)	partial			WP_011106108.1	hypothetical protein	32.4	36.1	93.2
MGA_54	LOCUS_00510	sequence12:136..318(-)	frameshift,internal_stop_codon	466..468(-),61..63(-),406..408(-)	336,562,483,534,204	WP_011072286.1	IS630-like element ISSod10 family transposase	60.0	10.6	66.7
MGA_94	LOCUS_00900	sequence14:1877..3052(-)	partial			WP_011263106.1	phosphoethanolamine--lipid A transferase	95.1	68.6	57.8
MGA_101	LOCUS_00970	sequence14:7017..8267(-)	partial			WP_002296493.1	virulence-associated E family protein	42.3	35.8	31.5
MGA_110	LOCUS_01060	sequence14:14314..15060(-)	partial			WP_002219437.1	KilA-N domain-containing protein	31.5	26.9	40.5
MGA_120	LOCUS_01160	sequence14:23175..24263(-)	partial			WP_010957062.1	TIR domain-containing protein	47.5	42.5	28.8
MGA_168	LOCUS_01630	sequence16:27821..28057(+)	partial			WP_005480056.1	hypothetical protein	100.0	62.9	96.2
MGA_349	LOCUS_03410	sequence20:10821..11219(+)	partial			WP_005461731.1	SDR family oxidoreductase	100.0	58.1	99.2
MGA_422	LOCUS_04130	sequence21:29678..30088(-)	frameshift		30080	WP_005457503.1	anaerobic C4-dicarboxylate transporter	100.0	31.3	96.3
MGA_423	LOCUS_04140	sequence21:30075..30983(-)	frameshift		30080	WP_005457503.1	anaerobic C4-dicarboxylate transporter	99.0	68.7	96.7
MGA_482	LOCUS_04730	sequence22:25916..26170(+)	partial			WP_005457697.1	hypothetical protein	70.2	70.2	100.0
MGA_594	LOCUS_05840	sequence23:58896..59075(+)	frameshift		59054	WP_005458661.1	DNA replication/repair protein RecF	91.5	15.0	98.1
MGA_595	LOCUS_05850	sequence23:59072..59974(+)	frameshift		59054	WP_005458661.1	DNA replication/repair protein RecF	100.0	83.6	98.3
MGA_691	LOCUS_06810	sequence24:86785..91302(-)	partial			WP_164925919.1	MSHA biogenesis protein MshQ	64.7	78.0	29.6
MGA_697	LOCUS_06870	sequence24:93935..94390(-)	partial			WP_139685680.1	type II secretion system protein	77.5	73.4	48.8
MGA_707	LOCUS_06970	sequence24:104150..104368(-)	internal_stop_codon	104384..104386(-)		WP_011106082.1	RNase E specificity factor CsrD	100.0	10.8	95.8
MGA_708	LOCUS_06980	sequence24:104384..106087(-)	internal_stop_codon	104384..104386(-)		WP_011106082.1	RNase E specificity factor CsrD	100.0	84.8	99.8
MGA_718	LOCUS_07080	sequence24:122534..122920(+)	frameshift,internal_stop_codon	122952..122954(+)	123152,123023	WP_011072286.1	IS630-like element ISSod10 family transposase	94.5	35.5	46.3
MGA_806	LOCUS_07960	sequence25:97601..98866(+)	partial			WP_005483023.1	site-specific integrase	79.1	55.9	38.3
MGA_812	LOCUS_08020	sequence25:103349..105037(-)	partial			WP_010887175.1	DUF3987 domain-containing protein	73.0	47.3	27.4
MGA_813	LOCUS_08030	sequence25:105200..106228(-)	partial			WP_005483023.1	site-specific integrase	88.6	51.3	31.0
MGA_827	LOCUS_08170	sequence25:123574..124872(+)	frameshift		124866	WP_005464242.1	alanine/glycine:cation symporter family protein	99.8	83.7	95.4
MGA_828	LOCUS_08180	sequence25:124865..125128(+)	frameshift		124866	WP_005464242.1	alanine/glycine:cation symporter family protein	100.0	16.9	97.7
MGA_907	LOCUS_08970	sequence26:28348..29106(-)	frameshift		29206	WP_005480231.1	mannose-6-phosphate isomerase, class I	100.0	62.8	95.7
MGA_908	LOCUS_08980	sequence26:29165..29566(-)	frameshift		29206	WP_005480231.1	mannose-6-phosphate isomerase, class I	95.5	30.9	94.5
MGA_969	LOCUS_09590	sequence26:98662..99285(+)	frameshift		99261	WP_005455363.1	trans-2-enoyl-CoA reductase family protein	96.6	50.1	96.5
MGA_970	LOCUS_09600	sequence26:99344..99862(+)	frameshift		99261	WP_005455363.1	trans-2-enoyl-CoA reductase family protein	100.0	43.1	98.8
MGA_972	LOCUS_09620	sequence26:101722..101961(+)	internal_stop_codon	101719..101721(+)		WP_005479772.1	GGDEF and EAL domain-containing protein	100.0	12.4	100.0
MGA_1045	LOCUS_10350	sequence26:191400..192794(+)	partial			WP_016117864.1	ATP-binding protein	86.9	72.0	27.6
MGA_1088	LOCUS_10770	sequence27:34882..35262(-)	partial			WP_005482409.1	disulfide bond formation protein DsbB	93.7	66.3	100.0
MGA_1099	LOCUS_10880	sequence27:49285..50316(-)	internal_stop_codon	50452..50454(-)		WP_005461594.1	ribonuclease E	100.0	33.5	77.3
MGA_1100	LOCUS_10890	sequence27:50452..52356(-)	internal_stop_codon	50452..50454(-)		WP_005461594.1	ribonuclease E	93.2	57.8	98.3
MGA_1246	LOCUS_12350	sequence27:220906..221118(+)	frameshift		220904	WP_005458065.1	cache domain-containing protein	100.0	15.4	100.0
MGA_1263	LOCUS_12520	sequence27:238868..240052(-)	partial			WP_005483257.1	EAL domain-containing protein	100.0	69.0	98.7
MGA_1283	LOCUS_12710	sequence28:3573..4409(+)	frameshift		3411	WP_005478398.1	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	100.0	79.2	73.4
MGA_1328	LOCUS_13160	sequence28:46153..47979(+)	partial			WP_011460310.1	Ig-like domain-containing protein	26.5	43.4	30.5
MGA_1330	LOCUS_13180	sequence28:50138..52156(+)	partial			WP_000581724.1	toxin B	90.5	19.3	32.8
MGA_1331	LOCUS_13190	sequence28:52300..59061(+)	partial			WP_000581724.1	toxin B	85.5	60.8	28.8
MGA_1332	LOCUS_13200	sequence28:59240..59716(-)	frameshift		59742	WP_021706804.1	IS5-like element ISVpa3 family transposase	100.0	51.6	95.6
MGA_1333	LOCUS_13210	sequence28:59707..60105(-)	frameshift		59736	WP_021706804.1	IS5-like element ISVpa3 family transposase	97.7	42.2	94.6
MGA_1338	LOCUS_13260	sequence28:68417..68557(-)	partial			WP_021706804.1	IS5-like element ISVpa3 family transposase	100.0	15.0	89.1
MGA_1339	LOCUS_13270	sequence28:68644..69033(-)	partial			WP_011969982.1	3-oxoadipyl-CoA thiolase	83.7	27.0	66.7
MGA_1343	LOCUS_13310	sequence28:71301..71759(-)	frameshift		71851	WP_005478128.1	cupin domain-containing protein	100.0	79.2	96.7
MGA_1366	LOCUS_13540	sequence28:93235..93855(+)	internal_stop_codon	93853..93855(+)		WP_000159137.1	pirin family protein	100.0	73.0	67.5
MGA_1367	LOCUS_13550	sequence28:93898..94083(+)	internal_stop_codon	93853..93855(+)		WP_000159137.1	pirin family protein	100.0	21.6	63.9
MGA_1382	LOCUS_13700	sequence28:107602..107856(+)	partial			WP_005491015.1	hypothetical protein	100.0	67.7	97.6
MGA_1489	LOCUS_14770	sequence28:228520..228705(+)	partial			WP_005488020.1	MerR family transcriptional regulator	100.0	51.7	93.4
MGA_1603	LOCUS_15910	sequence28:361912..362322(+)	internal_stop_codon	362320..362322(+)		WP_005463834.1	histidine phosphatase family protein	100.0	77.7	99.3
MGA_1684	LOCUS_16720	sequence29:81811..82557(-)	internal_stop_codon	82585..82587(-)		WP_005479074.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	100.0	72.7	98.0
MGA_1685	LOCUS_16730	sequence29:82585..82836(-)	internal_stop_codon	82585..82587(-)		WP_005479074.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	100.0	24.3	98.8
MGA_1779	LOCUS_17670	sequence29:191938..192234(-)	partial			WP_005482297.1	YebG family protein	74.5	74.5	100.0
MGA_1799	LOCUS_17870	sequence29:217660..217983(+)	frameshift		217642	WP_005488976.1	DUF4397 domain-containing protein	100.0	76.4	96.3
MGA_1894	LOCUS_18820	sequence29:311778..312476(+)	frameshift		312398	WP_005481067.1	flagellin	89.7	55.2	97.1
MGA_1895	LOCUS_18830	sequence29:312473..312910(+)	frameshift		312401	WP_005481067.1	flagellin	100.0	38.5	98.6
MGA_1991	LOCUS_19740	sequence33:4379..4588(+)	partial			WP_155655847.1	YkgJ family cysteine cluster protein	94.2	66.3	76.9
MGA_1992	LOCUS_19750	sequence33:4846..5124(-)	partial			WP_088427844.1	hypothetical protein	79.3	62.9	71.2
MGA_1993	LOCUS_19760	sequence33:5256..5540(+)	frameshift		5498	WP_086026417.1	IS3-like element ISVpa2 family transposase	89.4	21.9	86.9
MGA_1994	LOCUS_19770	sequence33:5555..6406(+)	frameshift		5498	WP_086026417.1	IS3-like element ISVpa2 family transposase	100.0	73.9	91.2
MGA_1995	LOCUS_19780	sequence33:6396..6584(+)	frameshift		6566	WP_010973888.1	pyridoxamine 5'-phosphate oxidase family protein	90.3	26.0	46.4
MGA_2144	LOCUS_21270	sequence33:160993..168417(+)	partial			WP_005477759.1	tandem-95 repeat protein	94.2	73.4	57.5
MGA_2160	LOCUS_21430	sequence33:188051..188365(-)	frameshift		188391	WP_005457114.1	3-deoxy-7-phosphoheptulonate synthase	100.0	29.7	99.0
MGA_2161	LOCUS_21440	sequence33:188362..189102(-)	frameshift		188388	WP_005457114.1	3-deoxy-7-phosphoheptulonate synthase	96.7	68.0	100.0
MGA_2277	LOCUS_22600	sequence33:317072..317311(-)	frameshift		317387	WP_005483469.1	ATP-dependent RNA helicase HrpA	100.0	5.9	100.0
MGA_2313	LOCUS_22960	sequence33:358835..360175(-)	internal_stop_codon	360209..360211(-)		WP_005493834.1	DUF4150 domain-containing protein	98.4	59.8	41.4
MGA_2315	LOCUS_22980	sequence33:361215..364454(-)	partial			WP_005493834.1	DUF4150 domain-containing protein	38.3	57.4	53.1
MGA_2343	LOCUS_23260	sequence33:403847..>404459(-)	partial			WP_103414330.1	tandem large repeat	100.0	5.5	78.8
MGA_2476	LOCUS_24590	sequence34:151003..151692(-)	partial			WP_004080164.1	diguanylate cyclase	81.2	27.8	34.7
MGA_2484	LOCUS_24670	sequence34:157795..158619(+)	frameshift		157714	WP_089600859.1	IS3 family transposase	99.6	71.5	69.6
MGA_2486	LOCUS_24690	sequence34:159277..159771(-)	frameshift,internal_stop_codon	159277..159279(-),159016..159018(-)	159258	WP_064240716.1	site-specific integrase	96.3	38.0	30.4
MGA_2516	LOCUS_24990	sequence34:185399..186004(+)	partial			WP_003130183.1	sugar O-acetyltransferase	51.7	50.2	39.4
MGA_2537	LOCUS_25200	sequence34:207214..208281(+)	partial			WP_010966332.1	glycosyltransferase	57.5	55.7	29.4
MGA_2539	LOCUS_25220	sequence34:209384..209884(+)	partial			WP_012602186.1	galactoside O-acetyltransferase	63.3	47.8	35.2
MGA_2541	LOCUS_25240	sequence34:211123..212223(+)	partial			WP_164928857.1	glycosyltransferase family 4 protein	58.7	53.1	25.5
MGA_2549	LOCUS_25320	sequence34:220566..221963(+)	partial			WP_005462474.1	nucleoside-diphosphate sugar epimerase/dehydratase	98.5	70.6	95.2
MGA_2682	LOCUS_26650	sequence34:350167..350496(-)	frameshift		350566	WP_005479185.1	glycerol-3-phosphate 1-O-acyltransferase PlsY	100.0	53.7	100.0
MGA_2683	LOCUS_26660	sequence34:350471..350779(-)	frameshift		350566	WP_005479185.1	glycerol-3-phosphate 1-O-acyltransferase PlsY	71.6	36.0	100.0
MGA_2779	LOCUS_27620	sequence34:468128..468910(+)	frameshift		467886	WP_100069987.1	peptide chain release factor 2	100.0	71.2	99.2
MGA_2785	LOCUS_27680	sequence34:474458..474820(-)	frameshift		474833	WP_005481789.1	DNA mismatch repair endonuclease MutH	100.0	53.1	99.2
MGA_2786	LOCUS_27690	sequence34:474810..475139(-)	frameshift		474833	WP_005481789.1	DNA mismatch repair endonuclease MutH	93.6	45.1	100.0
MGA_2809	LOCUS_27920	sequence34:500277..500474(-)	frameshift		500499	WP_005477894.1	anhydro-N-acetylmuramic acid kinase	100.0	17.6	93.8
MGA_2810	LOCUS_27930	sequence34:500419..501390(-)	frameshift		500499	WP_005477894.1	anhydro-N-acetylmuramic acid kinase	93.8	81.9	97.7
MGA_2847	LOCUS_28300	sequence35:18189..18716(-)	partial			WP_011106217.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	100.0	74.8	96.6
MGA_2904	LOCUS_28870	sequence35:76009..76620(+)	internal_stop_codon	76618..76620(+)		WP_005455527.1	MBL fold metallo-hydrolase	100.0	70.5	99.5
MGA_2905	LOCUS_28880	sequence35:76639..76875(+)	internal_stop_codon	76618..76620(+)		WP_005455527.1	MBL fold metallo-hydrolase	100.0	27.1	98.7
MGA_2925	LOCUS_29080	sequence35:97038..97328(+)	frameshift		97301	WP_005482811.1	pirin family protein	91.7	38.1	100.0
MGA_2926	LOCUS_29090	sequence35:97315..97734(+)	frameshift		97301	WP_005482811.1	pirin family protein	100.0	60.2	98.6
MGA_2947	LOCUS_29300	sequence35:118214..118693(-)	internal_stop_codon	118697..118699(-)		WP_005481731.1	ABC transporter ATP-binding protein	100.0	68.5	100.0
MGA_2948	LOCUS_29310	sequence35:118697..118912(-)	internal_stop_codon	118697..118699(-)		WP_005481731.1	ABC transporter ATP-binding protein	100.0	30.6	97.2
MGA_2968	LOCUS_29510	sequence35:140335..140991(+)	partial			WP_005464837.1	LysR family transcriptional regulator	100.0	71.9	98.6
MGA_3058	LOCUS_30410	sequence35:247660..248040(+)	partial			WP_005458394.1	glycosidase	99.2	74.4	58.4
MGA_3154	LOCUS_31370	sequence35:353150..353926(+)	partial			WP_005462797.1	OmpA family protein	95.0	72.1	97.6
MGA_3186	LOCUS_31690	sequence35:387763..387996(+)	partial			WP_005478117.1	spore coat protein U domain-containing protein	100.0	23.9	94.8
MGA_3232	LOCUS_32150	sequence35:446258..448117(-)	partial			WP_011106517.1	VWA domain-containing protein	71.9	72.0	94.8
MGA_3298	LOCUS_32810	sequence35:534947..536380(-)	partial			WP_005491021.1	type III secretion system effector VopL	75.7	73.3	35.9
MGA_3299	LOCUS_32820	sequence35:536591..537307(+)	partial			WP_011106493.1	hypothetical protein	51.7	61.9	39.2
MGA_3348	LOCUS_33290	sequence36:39555..39881(-)	frameshift		39961	WP_005479004.1	TrkH family potassium uptake protein	100.0	23.7	97.2
MGA_3349	LOCUS_33300	sequence36:39881..40921(-)	frameshift		39961	WP_005479004.1	TrkH family potassium uptake protein	93.1	70.8	96.6
MGA_3353	LOCUS_33340	sequence36:44594..45094(-)	partial			WP_011105740.1	hypothetical protein	100.0	67.5	99.4
MGA_3545	LOCUS_35260	sequence37:94332..94529(-)	partial			WP_005495828.1	cyd operon protein YbgE	100.0	65.0	100.0
MGA_3614	LOCUS_35950	sequence37:175824..176672(-)	partial			WP_005481856.1	DNA internalization-related competence protein ComEC/Rec2	100.0	37.5	98.6
MGA_3627	LOCUS_36080	sequence37:191929..192243(-)	frameshift		192223	WP_005456243.1	YcfL family protein	93.3	74.6	100.0
MGA_3652	LOCUS_36320	sequence38:5866..7818(-)	frameshift		5901	WP_103414330.1	tandem large repeat	96.6	17.0	83.8
MGA_3672	LOCUS_36520	sequence38:27149..27328(-)	partial			WP_005480751.1	M20 family peptidase	100.0	11.6	89.8
MGA_3728	LOCUS_37080	sequence38:91548..91937(-)	partial			WP_001894072.1	translation initiation factor IF-3	100.0	70.5	82.2
MGA_3800	LOCUS_37800	sequence38:181441..182013(-)	frameshift		181473	WP_005478928.1	GNAT family N-acetyltransferase	95.8	77.4	97.3
MGA_3840	LOCUS_38190	sequence39:262..603(+)	frameshift,internal_stop_codon	81..83(+)	593,170,206	WP_086026417.1	IS3-like element ISVpa2 family transposase	97.3	28.7	90.9
MGA_3841	LOCUS_38200	sequence39:597..1112(+)	frameshift		591	WP_086026417.1	IS3-like element ISVpa2 family transposase	100.0	44.6	90.6
MGA_3842	LOCUS_38210	sequence39:1227..2414(-)	partial			WP_073085104.1	phospholipase D-like domain-containing protein	29.1	42.2	28.5
MGA_3846	LOCUS_38250	sequence39:5845..6219(-)	frameshift,internal_stop_codon	5844..5846(-)	5801,6354,6245	WP_010939300.1	ISL3-like element ISDvu5 family transposase	100.0	31.0	45.3
MGA_3851	LOCUS_38300	sequence39:11090..11734(-)	frameshift		11825	WP_005478461.1	beta-eliminating lyase-related protein	100.0	59.8	98.1
MGA_3852	LOCUS_38310	sequence39:11787..12167(-)	frameshift		11825	WP_005478461.1	beta-eliminating lyase-related protein	90.5	31.8	100.0
MGA_3865	LOCUS_38440	sequence39:23294..23506(-)	partial			WP_029793834.1	ABZJ_00895 family protein	100.0	46.1	94.3
MGA_3910	LOCUS_38890	sequence39:71660..72325(+)	internal_stop_codon	72323..72325(+)		WP_005481319.1	LysR family transcriptional regulator	100.0	66.6	100.0
MGA_3911	LOCUS_38900	sequence39:72377..72616(+)	internal_stop_codon	72323..72325(+)		WP_005481319.1	LysR family transcriptional regulator	100.0	23.8	86.1
MGA_3993	LOCUS_39720	sequence39:181019..181462(+)	frameshift		181321	WP_005483380.1	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	69.4	28.0	99.0
MGA_3994	LOCUS_39730	sequence39:181459..182112(+)	frameshift		181321	WP_005483380.1	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	100.0	59.6	99.5
MGA_4105	LOCUS_40840	sequence39:296646..297527(+)	partial			WP_005461998.1	AraC family transcriptional regulator	74.1	78.9	94.5
MGA_4126	LOCUS_41050	sequence39:317378..318148(-)	frameshift		318215	WP_005462067.1	aromatic amino acid transport family protein	100.0	66.5	99.6
MGA_4127	LOCUS_41060	sequence39:318171..318602(-)	frameshift		318215	WP_005462067.1	aromatic amino acid transport family protein	75.5	28.1	97.2
MGA_4149	LOCUS_41280	sequence39:339976..340563(-)	partial			WP_011106281.1	endonuclease/exonuclease/phosphatase family protein	100.0	61.9	99.0
MGA_4211	LOCUS_41900	sequence39:417867..418313(-)	frameshift		418393	WP_005490863.1	DUF808 domain-containing protein	100.0	49.2	98.6
MGA_4212	LOCUS_41910	sequence39:418382..418771(-)	frameshift		418393	WP_005490863.1	DUF808 domain-containing protein	97.7	41.9	85.7
MGA_4230	LOCUS_42090	sequence39:438894..439409(-)	frameshift		439416	WP_005479860.1	LysR family transcriptional regulator	100.0	55.0	96.5
MGA_4231	LOCUS_42100	sequence39:439390..439830(-)	frameshift		439419	WP_005479860.1	LysR family transcriptional regulator	94.5	44.4	99.3
MGA_4288	LOCUS_42670	sequence39:501509..501697(-)	partial			WP_005464150.1	DUF134 domain-containing protein	100.0	64.6	95.2
MGA_4350	LOCUS_43290	sequence39:567645..568109(+)	partial			WP_005481481.1	lytic transglycosylase domain-containing protein	100.0	62.1	100.0
MGA_4401	LOCUS_43800	sequence39:622766..623146(+)	frameshift		623113	WP_011963672.1	DUF6035 family protein	91.3	20.9	32.8