{ "type": "genome", "identifier": "GCF_000813365.1", "organism": "Streptomyces albus", "title": "Streptomyces albus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation Biological Resource Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000813365.1", "bioproject": "PRJNA224116", "biosample": "SAMD00023485", "wgs_master": "BBQG00000000.1", "refseq_category": "na", "taxid": "1888", "species_taxid": "1888", "organism_name": "Streptomyces albus", "infraspecific_name": "strain=NBRC 13014", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/12/15", "asm_name": "ASM81336v1", "asm_submitter": "National Institute of Technology and Evaluation Biological Resource Center", "gbrs_paired_asm": "GCA_000813365.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/813/365/GCF_000813365.1_ASM81336v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7594511", "genome_size_ungapped": "7587090", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "95", "contig_count": "95", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2023-08-06", "total_gene_count": "6465", "protein_coding_gene_count": "6220", "non_coding_gene_count": "66", "pubmed_id": "25657283" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-12-15", "dateModified": "2014-12-15", "datePublished": "2014-12-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces albus" ], "sample_taxid": [ "1888" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "NA" ], "sample_host_location_id": [], "data_size": "2.031 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 9.38, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7594511", "Number of Sequences": "95", "Longest Sequences (bp)": "428540", "N50 (bp)": "145917", "Gap Ratio (%)": "0.097768", "GCcontent (%)": "72.7", "Number of CDSs": "6479", "Average Protein Length": "333.9", "Coding Ratio (%)": "85.5", "Number of rRNAs": "4", "Number of tRNAs": "80", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces albus", "strain": "strain=NBRC 13014", "accession": "GCA_000813365.1", "taxid": 1888, "species_taxid": 1888, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 2474, "total_fragments": 2479, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces albus subsp. albus", "strain": "strain=NRRL B-1811", "accession": "GCA_000725885.1", "taxid": 67257, "species_taxid": 1888, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9868, "matched_fragments": 2450, "total_fragments": 2479, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces reniochalinae", "strain": "strain=LHW50302", "accession": "GCA_003323735.1", "taxid": 2250578, "species_taxid": 2250578, "relation_to_type": "type", "validated": true, "ani": 85.543, "matched_fragments": 1677, "total_fragments": 2479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces diacarni", "strain": "strain=LHW51701", "accession": "GCA_003323715.1", "taxid": 2800381, "species_taxid": 2800381, "relation_to_type": "type", "validated": true, "ani": 85.4492, "matched_fragments": 1685, "total_fragments": 2479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces smyrnaeus", "strain": "strain=DSM 42105", "accession": "GCA_017676345.1", "taxid": 1387713, "species_taxid": 1387713, "relation_to_type": "type", "validated": true, "ani": 85.0654, "matched_fragments": 1675, "total_fragments": 2479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces spirodelae", "strain": "strain=DW4-2", "accession": "GCA_017676385.1", "taxid": 2812904, "species_taxid": 2812904, "relation_to_type": "type", "validated": true, "ani": 85.031, "matched_fragments": 1569, "total_fragments": 2479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces oryzae", "strain": "strain=S16-07", "accession": "GCA_017676365.1", "taxid": 1434886, "species_taxid": 1434886, "relation_to_type": "type", "validated": true, "ani": 85.0289, "matched_fragments": 1462, "total_fragments": 2479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cacaoi", "strain": "strain=NRRL B-1220", "accession": "GCA_002154495.1", "taxid": 1898, "species_taxid": 1898, "relation_to_type": "type", "validated": true, "ani": 82.8281, "matched_fragments": 1359, "total_fragments": 2479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cacaoi", "strain": "strain=NBRC 12748", "accession": "GCA_006539165.1", "taxid": 1898, "species_taxid": 1898, "relation_to_type": "type", "validated": true, "ani": 82.7174, "matched_fragments": 1591, "total_fragments": 2479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseocarneus", "strain": "strain=JCM 4580", "accession": "GCA_014655595.1", "taxid": 51201, "species_taxid": 51201, "relation_to_type": "type", "validated": true, "ani": 80.1667, "matched_fragments": 1093, "total_fragments": 2479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces pinistramenti", "strain": "strain=SF28", "accession": "GCA_020564935.1", "taxid": 2884812, "species_taxid": 2884812, "relation_to_type": "type", "validated": true, "ani": 80.0623, "matched_fragments": 1139, "total_fragments": 2479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces albireticuli", "strain": "strain=NRRL B1670", "accession": "GCA_021228125.1", "taxid": 1940, "species_taxid": 1940, "relation_to_type": "type", "validated": true, "ani": 79.9137, "matched_fragments": 1134, "total_fragments": 2479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rapamycinicus", "strain": "strain=NRRL 5491", "accession": "GCA_024298965.1", "taxid": 1226757, "species_taxid": 1226757, "relation_to_type": "type", "validated": true, "ani": 79.8374, "matched_fragments": 1296, "total_fragments": 2479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces barringtoniae", "strain": "strain=JA03", "accession": "GCA_020819595.1", "taxid": 2892029, "species_taxid": 2892029, "relation_to_type": "type", "validated": true, "ani": 79.5112, "matched_fragments": 1120, "total_fragments": 2479, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 9.38, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000725885.1", "gtdb_species": "s__Streptomyces albus", "ani": 99.9868, "matched_fragments": 2450, "total_fragments": 2479, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.54", "min_intra_species_ani": "97.77", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.92", "num_clustered_genomes": 14, "status": "conclusive" }, { "accession": "GCF_013302895.1", "gtdb_species": "s__Streptomyces chlorinus", "ani": 86.6008, "matched_fragments": 1789, "total_fragments": 2479, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003323735.1", "gtdb_species": "s__Streptomyces reniochalinae", "ani": 85.567, "matched_fragments": 1672, "total_fragments": 2479, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003323715.1", "gtdb_species": "s__Streptomyces diacarni", "ani": 85.4173, "matched_fragments": 1691, "total_fragments": 2479, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000424785.1", "gtdb_species": "s__Streptomyces sp000424785", "ani": 85.3186, "matched_fragments": 1662, "total_fragments": 2479, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017676345.1", "gtdb_species": "s__Streptomyces smyrnaeus", "ani": 85.0715, "matched_fragments": 1674, "total_fragments": 2479, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.11", "min_intra_species_ani": "97.08", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.88", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_017676365.1", "gtdb_species": "s__Streptomyces oryzae", "ani": 85.0399, "matched_fragments": 1461, "total_fragments": 2479, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017676385.1", "gtdb_species": "s__Streptomyces sp017676385", "ani": 85.0108, "matched_fragments": 1573, "total_fragments": 2479, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006539165.1", "gtdb_species": "s__Streptomyces cacaoi", "ani": 82.7225, "matched_fragments": 1592, "total_fragments": 2479, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.44", "min_intra_species_ani": "99.09", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.94", "num_clustered_genomes": 7, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.201, "cell_length": -0.05, "doubling_h": 0.103, "growth_tmp": 28.0, "optimum_tmp": 28.0, "optimum_ph": 7.341, "genome_size": 7727694.8, "gc_content": 73.001, "coding_genes": 6340.714, "rRNA16S_genes": 6.5, "tRNA_genes": 65.6, "gram_stain": 1.0, "sporulation": 1.0, "motility": 0.0, "range_salinity": 0.666, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 1.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Streptomyces", "albus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }