{ "type": "genome", "identifier": "GCF_000814475.1", "organism": "Flavihumibacter solisilvae", "title": "Flavihumibacter solisilvae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Huazhong Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000814475.1", "bioproject": "PRJNA224116", "biosample": "SAMN03152361", "wgs_master": "JSVC00000000.1", "refseq_category": "reference genome", "taxid": "1349421", "species_taxid": "1349421", "organism_name": "Flavihumibacter solisilvae", "infraspecific_name": "strain=3-3", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/01/05", "asm_name": "ASM81447v1", "asm_submitter": "Huazhong Agricultural University", "gbrs_paired_asm": "GCA_000814475.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/814/475/GCF_000814475.1_ASM81447v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5410659", "genome_size_ungapped": "5410659", "gc_percent": "47.000000", "replicon_count": "0", "scaffold_count": "75", "contig_count": "75", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000814475.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4703", "protein_coding_gene_count": "4644", "non_coding_gene_count": "46", "pubmed_id": "26388970" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-01-05", "dateModified": "2015-01-05", "datePublished": "2015-01-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavihumibacter solisilvae" ], "sample_taxid": [ "1349421" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Viet Nam" ], "sample_host_location_id": [], "data_size": "1.545 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5410659", "Number of Sequences": "75", "Longest Sequences (bp)": "450790", "N50 (bp)": "222161", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "47.0", "Number of CDSs": "4581", "Average Protein Length": "359.6", "Coding Ratio (%)": "91.3", "Number of rRNAs": "2", "Number of tRNAs": "40", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavihumibacter solisilvae", "strain": "strain=3-3", "accession": "GCA_000814475.1", "taxid": 1349421, "species_taxid": 1349421, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1770, 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"status": "below_threshold" }, { "organism_name": "Flavihumibacter fluminis", "strain": "strain=IMCC34837", "accession": "GCA_018595675.2", "taxid": 2838157, "species_taxid": 2838157, "relation_to_type": "type", "validated": true, "ani": 77.4032, "matched_fragments": 252, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavihumibacter petaseus", "strain": "strain=NBRC 106054", "accession": "GCA_000974785.1", "taxid": 549295, "species_taxid": 549295, "relation_to_type": "type", "validated": true, "ani": 77.3438, "matched_fragments": 259, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niabella beijingensis", "strain": "strain=3A5MI-3", "accession": "GCA_020034665.1", "taxid": 2872700, "species_taxid": 2872700, "relation_to_type": "type", "validated": true, "ani": 76.4059, "matched_fragments": 51, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraflavitalea soli", "strain": "strain=5GH32-13", "accession": "GCA_003555545.1", "taxid": 2315862, "species_taxid": 2315862, "relation_to_type": "type", "validated": true, "ani": 76.3986, "matched_fragments": 95, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavisolibacter ginsengisoli", "strain": "strain=DSM 18119", "accession": "GCA_900129295.1", "taxid": 462367, "species_taxid": 462367, "relation_to_type": "type", "validated": true, "ani": 76.3602, "matched_fragments": 60, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Terrimonas ferruginea", "strain": "strain=DSM 30193", "accession": "GCA_000425585.1", "taxid": 249, "species_taxid": 249, "relation_to_type": "type", "validated": true, "ani": 76.1596, "matched_fragments": 81, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella yeongjuensis", "strain": "strain=DSM 17621", "accession": "GCA_002077935.1", "taxid": 354355, "species_taxid": 354355, "relation_to_type": "type", "validated": true, "ani": 76.1214, "matched_fragments": 89, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella yeongjuensis", "strain": "strain=DSM 17621", "accession": "GCA_900110245.1", "taxid": 354355, "species_taxid": 354355, "relation_to_type": "type", "validated": true, "ani": 75.9517, "matched_fragments": 88, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga parva", "strain": "strain=LY-1", "accession": "GCA_003071345.1", "taxid": 2169414, "species_taxid": 2169414, "relation_to_type": "type", "validated": true, "ani": 75.9379, "matched_fragments": 54, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niabella aurantiaca", "strain": "strain=DSM 17617", "accession": "GCA_000374125.1", "taxid": 379900, "species_taxid": 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