{ "type": "genome", "identifier": "GCF_000814665.1", "organism": "Pseudoalteromonas flavipulchra NCIMB 2033 = ATCC BAA-314", "title": "Pseudoalteromonas flavipulchra NCIMB 2033 = ATCC BAA-314", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Missouri", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000814665.1", "bioproject": "PRJNA224116", "biosample": "SAMN03220270", "wgs_master": "JWIH00000000.1", "refseq_category": "na", "taxid": "1315273", "species_taxid": "184924", "organism_name": "Pseudoalteromonas flavipulchra NCIMB 2033 = ATCC BAA-314", "infraspecific_name": "strain=ATCC:BAA-314", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/01/05", "asm_name": "ASM81466v1", "asm_submitter": "University of Missouri", "gbrs_paired_asm": "GCA_000814665.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/814/665/GCF_000814665.1_ASM81466v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from synonym type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5454522", "genome_size_ungapped": "5454522", "gc_percent": "43.500000", "replicon_count": "0", "scaffold_count": "25", "contig_count": "25", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000814665.1-RS_2024_08_18", "annotation_date": "2024-08-18", "total_gene_count": "4791", "protein_coding_gene_count": "4615", "non_coding_gene_count": "135", "pubmed_id": "25953181" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-01-05", "dateModified": "2015-01-05", "datePublished": "2015-01-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudoalteromonas flavipulchra NCIMB 2033 = ATCC BAA-314" ], "sample_taxid": [ "1315273" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: Nice" ], "sample_host_location_id": [], "data_size": "1.552 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5454522", "Number of Sequences": "25", "Longest Sequences (bp)": "816400", "N50 (bp)": "432754", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.3", "Number of CDSs": "4638", "Average Protein Length": "341.5", "Coding Ratio (%)": "87.1", "Number of rRNAs": "11", "Number of tRNAs": "101", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudoalteromonas flavipulchra", "strain": "strain=LMG 20361", "accession": "GCA_014596995.1", "taxid": 137779, "species_taxid": 137779, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9924, "matched_fragments": 1757, "total_fragments": 1807, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Pseudoalteromonas flavipulchra", "strain": "strain=NCIMB 2033", "accession": "GCA_014858715.1", "taxid": 137779, "species_taxid": 137779, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9654, "matched_fragments": 1780, "total_fragments": 1807, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Pseudoalteromonas piscicida", "strain": "strain=ATCC 15057", "accession": "GCA_000382005.1", "taxid": 43662, "species_taxid": 43662, "relation_to_type": "type", "validated": true, "ani": 96.1632, "matched_fragments": 1538, "total_fragments": 1807, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Pseudoalteromonas piscicida", "strain": "strain=JCM 20779", "accession": "GCA_000238315.4", "taxid": 43662, "species_taxid": 43662, "relation_to_type": "type", "validated": true, "ani": 96.0927, "matched_fragments": 1579, "total_fragments": 1807, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Pseudoalteromonas galatheae", "strain": "strain=S4498", "accession": "GCA_005886105.2", "taxid": 579562, "species_taxid": 579562, "relation_to_type": "type", "validated": true, "ani": 92.8215, "matched_fragments": 1445, "total_fragments": 1807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas distincta", "strain": "strain=ATCC 700518", "accession": "GCA_000814675.1", "taxid": 77608, "species_taxid": 77608, "relation_to_type": "type", "validated": true, "ani": 78.4312, "matched_fragments": 210, "total_fragments": 1807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas rhizosphaerae", "strain": "strain=RA15", "accession": "GCA_902498845.1", "taxid": 2518973, "species_taxid": 2518973, "relation_to_type": "type", 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"N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005886535.1", "gtdb_species": "s__Pseudoalteromonas sp005886535", "ani": 94.3948, "matched_fragments": 1414, "total_fragments": 1807, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002208135.1", "gtdb_species": "s__Pseudoalteromonas piscicida_A", "ani": 93.5315, "matched_fragments": 1507, "total_fragments": 1807, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.45", "min_intra_species_ani": "98.90", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.241, "cell_length": 0.166, "doubling_h": 0.348, "growth_tmp": 27.0, "optimum_tmp": 28.0, "optimum_ph": 7.0, "genome_size": 5166580.0, "gc_content": 43.2, "coding_genes": 3972.54, "rRNA16S_genes": 8.705, "tRNA_genes": 104.429, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Pseudoalteromonas", "flavipulchra", "NCIMB", "2033", "=", "ATCC", "BAA-314" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }