# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_2	LOCUS_00020	sequence1:925..1203(+)	internal_stop_codon	901..903(+),1201..1203(+)		WP_010963330.1	chromosomal replication initiator protein DnaA	100.0	19.7	38.7
MGA_8	LOCUS_00080	sequence1:5122..5502(+)	internal_stop_codon	5710..5712(+),5500..5502(+)		WP_010874497.1	bifunctional oligoribonuclease/PAP phosphatase NrnA	91.3	36.1	42.7
MGA_10	LOCUS_00100	sequence1:5824..6039(+)	frameshift,internal_stop_codon	5710..5712(+),5794..5796(+)	6021	WP_000545136.1	bifunctional oligoribonuclease/PAP phosphatase NrnA	83.1	19.0	44.1
MGA_11	LOCUS_00110	sequence1:6116..6490(+)	internal_stop_codon	6488..6490(+)		WP_010874497.1	bifunctional oligoribonuclease/PAP phosphatase NrnA	95.2	37.0	48.3
MGA_12	LOCUS_00120	sequence1:6686..6916(+)	internal_stop_codon	6914..6916(+),6968..6970(+),6488..6490(+)		WP_010874497.1	bifunctional oligoribonuclease/PAP phosphatase NrnA	96.1	22.5	39.7
MGA_14	LOCUS_00140	sequence1:8049..8861(+)	internal_stop_codon	7872..7874(+)		WP_000007656.1	signal recognition particle-docking protein FtsY	97.4	79.6	48.3
MGA_15	LOCUS_00150	sequence1:9000..9239(+)	internal_stop_codon	9237..9239(+)		WP_010874978.1	RNase J family beta-CASP ribonuclease	98.7	13.9	50.0
MGA_16	LOCUS_00160	sequence1:9246..10709(+)	internal_stop_codon	9237..9239(+)		WP_011182989.1	ribonuclease J	97.3	81.0	25.6
MGA_21	LOCUS_00210	sequence1:12876..13463(+)	internal_stop_codon	13461..13463(+)		WP_003227570.1	arginine--tRNA ligase	97.9	34.0	40.2
MGA_22	LOCUS_00220	sequence1:13590..13856(+)	internal_stop_codon	13854..13856(+),13461..13463(+)		WP_012583838.1	arginine--tRNA ligase	97.7	15.8	48.3
MGA_23	LOCUS_00230	sequence1:13983..14480(+)	internal_stop_codon	13854..13856(+)		WP_003723609.1	arginine--tRNA ligase	100.0	31.3	31.0
MGA_25	LOCUS_00250	sequence1:14927..15313(+)	internal_stop_codon	14846..14848(+),15311..15313(+)		WP_003641904.1	class II fructose-1,6-bisphosphate aldolase	98.4	43.9	61.9
MGA_26	LOCUS_00260	sequence1:15335..15622(+)	internal_stop_codon	15311..15313(+)		WP_010964145.1	class II fructose-1,6-bisphosphate aldolase	100.0	33.4	58.3
MGA_27	LOCUS_00270	sequence1:15629..15967(+)	internal_stop_codon	15965..15967(+)		WP_011166934.1	RluA family pseudouridine synthase	92.9	34.8	36.2
MGA_28	LOCUS_00280	sequence1:16001..16468(+)	internal_stop_codon	15965..15967(+)		WP_011166934.1	RluA family pseudouridine synthase	98.7	54.0	34.4
MGA_31	LOCUS_00310	sequence1:18006..18542(+)	internal_stop_codon	18540..18542(+)		WP_011183059.1	amidase family protein	94.9	35.5	48.5
MGA_33	LOCUS_00330	sequence1:19318..20271(+)	partial			WP_015545356.1	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	89.3	60.3	53.6
MGA_39	LOCUS_00390	sequence1:26390..26551(-)	internal_stop_codon	26207..26209(-),26276..26278(-),26348..26350(-),26390..26392(-),26576..26578(-)		WP_000384691.1	isoleucine--tRNA ligase	100.0	5.8	47.2
MGA_40	LOCUS_00400	sequence1:27023..27274(-)	internal_stop_codon	27023..27025(-),27476..27478(-),26888..26890(-),27287..27289(-),26873..26875(-)		WP_004081557.1	isoleucine--tRNA ligase	100.0	9.5	42.5
MGA_42	LOCUS_00420	sequence1:28606..29841(-)	internal_stop_codon	28606..28608(-),29845..29847(-)		WP_003547478.1	DNA topoisomerase IV subunit A	99.0	49.9	45.1
MGA_43	LOCUS_00430	sequence1:29845..30132(-)	internal_stop_codon	29845..29847(-)		WP_011166695.1	DNA topoisomerase IV subunit A	91.6	9.7	74.7
MGA_44	LOCUS_00440	sequence1:30317..31909(-)	internal_stop_codon	30197..30199(-),31937..31939(-),30317..30319(-)		WP_011166694.1	DNA topoisomerase IV subunit B	99.8	82.3	47.3
MGA_45	LOCUS_00450	sequence1:32252..32521(+)	internal_stop_codon	32519..32521(+)		WP_010964028.1	type I glyceraldehyde-3-phosphate dehydrogenase	100.0	24.9	65.2
MGA_46	LOCUS_00460	sequence1:32543..33262(+)	internal_stop_codon	32519..32521(+)		WP_010874786.1	type I glyceraldehyde-3-phosphate dehydrogenase	99.6	70.9	64.0
MGA_50	LOCUS_00500	sequence1:35279..36184(-)	internal_stop_codon	36257..36259(-)		WP_011476190.1	ribonuclease R	100.0	37.9	33.0
MGA_51	LOCUS_00510	sequence1:36257..36727(-)	internal_stop_codon	36257..36259(-)		WP_004081010.1	ribonuclease R	91.0	20.1	56.6
MGA_54	LOCUS_00540	sequence1:37637..38197(-)	internal_stop_codon	38261..38263(-),38252..38254(-),38330..38332(-)		WP_011016755.1	cardiolipin synthase	73.1	28.6	36.5
MGA_56	LOCUS_00560	sequence1:39330..40199(-)	internal_stop_codon	39330..39332(-)		WP_011166605.1	recombinase RecA	96.5	80.9	63.4
MGA_63	LOCUS_00630	sequence1:44551..44925(+)	internal_stop_codon	44923..44925(+)		WP_011183225.1	DNA polymerase IV	95.2	32.2	33.6
MGA_69	LOCUS_00690	sequence1:48373..49116(+)	internal_stop_codon	49114..49116(+)		WP_003356056.1	F0F1 ATP synthase subunit alpha	99.2	48.6	57.1
MGA_70	LOCUS_00700	sequence1:49117..49896(+)	internal_stop_codon	49114..49116(+)		WP_010874957.1	F0F1 ATP synthase subunit alpha	95.8	48.1	56.2
MGA_74	LOCUS_00740	sequence1:52543..52926(+)	internal_stop_codon	52924..52926(+)		WP_010874885.1	Holliday junction resolvase RecU	89.0	66.3	38.6
MGA_76	LOCUS_00760	sequence1:53443..53655(+)	internal_stop_codon	53431..53433(+),53653..53655(+)		WP_011057525.1	30S ribosomal protein S2	87.1	23.2	45.9
MGA_77	LOCUS_00770	sequence1:53707..54261(+)	internal_stop_codon	53431..53433(+),53653..53655(+)		WP_003220918.1	30S ribosomal protein S2	64.1	47.2	40.3
MGA_81	LOCUS_00810	sequence1:56779..57030(+)	internal_stop_codon	56764..56766(+),57028..57030(+)		WP_001030080.1	glycine--tRNA ligase	69.9	12.5	50.0
MGA_82	LOCUS_00820	sequence1:57175..57459(+)	internal_stop_codon	57457..57459(+),57028..57030(+)		WP_003857047.1	glycine--tRNA ligase	97.9	20.0	55.4
MGA_83	LOCUS_00830	sequence1:57499..57753(+)	internal_stop_codon	57457..57459(+),57751..57753(+)		WP_011964517.1	glycine--tRNA ligase	90.5	15.4	44.3
MGA_86	LOCUS_00860	sequence1:61114..61323(+)	internal_stop_codon	61321..61323(+)		WP_013224472.1	RNA polymerase sigma factor	92.8	13.7	65.6
MGA_87	LOCUS_00870	sequence1:61387..61863(+)	internal_stop_codon	61861..61863(+),61321..61323(+)		WP_026138868.1	RNA polymerase sigma factor RpoD	99.4	38.3	43.9
MGA_88	LOCUS_00880	sequence1:62017..62658(+)	internal_stop_codon	61966..61968(+)		WP_005902529.1	Nif3-like dinuclear metal center hexameric protein	97.2	81.8	30.4
MGA_90	LOCUS_00900	sequence1:63504..64016(+)	internal_stop_codon	64014..64016(+),64077..64079(+)		WP_011962338.1	tyrosine--tRNA ligase	93.5	39.7	48.0
MGA_91	LOCUS_00910	sequence1:64086..64304(+)	internal_stop_codon	64302..64304(+),64014..64016(+),64077..64079(+)		WP_011166856.1	tyrosine--tRNA ligase	93.1	15.9	41.8
MGA_92	LOCUS_00920	sequence1:64401..64748(+)	internal_stop_codon	64302..64304(+)		WP_001021122.1	tyrosine--tRNA ligase	95.7	27.0	33.9
MGA_94	LOCUS_00940	sequence1:65593..66354(+)	internal_stop_codon	66352..66354(+)		WP_011166830.1	DUF4011 domain-containing protein	98.4	37.3	36.9
MGA_96	LOCUS_00960	sequence1:67183..68829(+)	internal_stop_codon	68857..68859(+),68827..68829(+),68845..68847(+)		WP_008363296.1	DUF4011 domain-containing protein	95.6	33.2	42.5
MGA_103	LOCUS_01030	sequence1:74754..75386(+)	internal_stop_codon	75384..75386(+)		WP_011183314.1	molecular chaperone DnaK	100.0	35.5	70.0
MGA_104	LOCUS_01040	sequence1:75438..76556(+)	internal_stop_codon	75384..75386(+)		WP_011183314.1	molecular chaperone DnaK	97.0	60.6	55.1
MGA_106	LOCUS_01060	sequence1:77935..78372(+)	internal_stop_codon	78370..78372(+)		WP_003700259.1	(d)CMP kinase	97.9	64.3	36.6
MGA_107	LOCUS_01070	sequence1:78427..78618(+)	internal_stop_codon	78370..78372(+)		WP_003358949.1	(d)CMP kinase	74.6	21.7	46.8
MGA_108	LOCUS_01080	sequence1:78643..78783(+)	internal_stop_codon	78901..78903(+),78781..78783(+)		WP_011016201.1	ribosome biogenesis GTPase Der	97.8	10.2	64.4
MGA_110	LOCUS_01100	sequence1:79000..79515(+)	internal_stop_codon	78901..78903(+),79513..79515(+),79591..79593(+),78781..78783(+)		WP_011016201.1	ribosome biogenesis GTPase Der	93.6	36.8	48.1
MGA_111	LOCUS_01110	sequence1:79600..79956(+)	internal_stop_codon	79513..79515(+),79591..79593(+)		WP_003700239.1	ribosome biogenesis GTPase Der	87.3	23.6	45.6
MGA_118	LOCUS_01180	sequence1:83690..84139(-)	internal_stop_codon	84251..84253(-)		WP_011393940.1	elongation factor G	96.0	20.5	63.6
MGA_119	LOCUS_01190	sequence1:84251..84424(-)	internal_stop_codon	84251..84253(-),84461..84463(-)		WP_004081841.1	elongation factor G	100.0	8.2	80.7
MGA_120	LOCUS_01200	sequence1:84461..85366(-)	internal_stop_codon	84251..84253(-),84461..84463(-),85415..85417(-),85559..85561(-)		WP_011183519.1	elongation factor G	100.0	43.7	59.3
MGA_121	LOCUS_01210	sequence1:85559..85774(-)	internal_stop_codon	85415..85417(-),85559..85561(-)		WP_011166361.1	elongation factor G	100.0	10.3	85.9
MGA_122	LOCUS_01220	sequence1:85949..86257(-)	internal_stop_codon	85949..85951(-)		WP_002262491.1	30S ribosomal protein S7	100.0	65.4	58.8
MGA_123	LOCUS_01230	sequence1:86301..86651(-)	internal_stop_codon	86676..86678(-)		WP_001142340.1	30S ribosomal protein S12	97.4	80.7	78.8
MGA_128	LOCUS_01280	sequence1:88806..89081(+)	partial			WP_010874674.1	APC family permease	100.0	19.3	38.1
MGA_131	LOCUS_01310	sequence1:90341..90481(+)	internal_stop_codon	90479..90481(+)		WP_011182934.1	FAD-dependent oxidoreductase	100.0	10.2	65.2
MGA_132	LOCUS_01320	sequence1:90545..91438(+)	internal_stop_codon	90479..90481(+),91436..91438(+)		WP_011166460.1	FAD-dependent oxidoreductase	96.6	62.8	42.7
MGA_133	LOCUS_01330	sequence1:91454..91714(+)	internal_stop_codon	91436..91438(+)		WP_010874750.1	FAD-dependent oxidoreductase	91.9	16.1	51.9
MGA_134	LOCUS_01340	sequence1:92089..93069(-)	internal_stop_codon	92035..92037(-),92089..92091(-)		WP_012583823.1	pyrimidine-nucleoside phosphorylase	98.5	74.4	50.5
MGA_135	LOCUS_01350	sequence1:93071..93232(-)	internal_stop_codon	93440..93442(-)		WP_011183561.1	purine-nucleoside phosphorylase	98.1	22.1	53.8
MGA_136	LOCUS_01360	sequence1:93440..93769(-)	internal_stop_codon	93440..93442(-)		WP_011183561.1	purine-nucleoside phosphorylase	100.0	46.4	61.5
MGA_139	LOCUS_01390	sequence1:95266..97434(-)	internal_stop_codon	95266..95268(-)		WP_002381826.1	preprotein translocase subunit SecA	98.3	84.0	49.0
MGA_143	LOCUS_01430	sequence1:101208..102836(-)	internal_stop_codon	102846..102848(-),102876..102878(-)		WP_002361280.1	excinuclease ABC subunit UvrA	99.3	57.3	58.4
MGA_144	LOCUS_01440	sequence1:103077..103580(-)	internal_stop_codon	102846..102848(-),102876..102878(-),103605..103607(-),103077..103079(-)		WP_010990003.1	excinuclease ABC subunit UvrA	92.2	16.1	40.3
MGA_145	LOCUS_01450	sequence1:103605..104051(-)	internal_stop_codon	103605..103607(-)		WP_011182956.1	excinuclease ABC subunit UvrA	94.6	14.8	70.7
MGA_147	LOCUS_01470	sequence1:104993..106561(-)	internal_stop_codon	104993..104995(-),104924..104926(-)		WP_011166843.1	ribonuclease J	97.1	83.1	38.2
MGA_152	LOCUS_01520	sequence1:111459..111608(+)	internal_stop_codon	111606..111608(+)		WP_002357780.1	thioredoxin-disulfide reductase	93.9	15.1	63.0
MGA_153	LOCUS_01530	sequence1:111651..112376(+)	internal_stop_codon	111606..111608(+)		WP_011167087.1	thioredoxin-disulfide reductase	100.0	76.8	38.2
MGA_162	LOCUS_01620	sequence1:118848..119249(-)	internal_stop_codon	118758..118760(-),119520..119522(-),118848..118850(-)		WP_011183317.1	AAA family ATPase	98.5	18.8	61.9
MGA_164	LOCUS_01640	sequence1:119751..120659(-)	internal_stop_codon	119520..119522(-),119751..119753(-)		WP_011057229.1	ATP-dependent chaperone ClpB	97.7	33.8	53.2
MGA_165	LOCUS_01650	sequence1:120812..121321(+)	internal_stop_codon	121319..121321(+)		WP_011948028.1	triose-phosphate isomerase	98.2	66.1	46.8
MGA_171	LOCUS_01710	sequence1:126372..127523(-)	partial			WP_010874641.1	P80 family lipoprotein	17.8	7.7	48.5
MGA_175	LOCUS_01750	sequence1:129986..130855(-)	internal_stop_codon	129986..129988(-)		WP_000435993.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	100.0	45.0	57.4
MGA_176	LOCUS_01760	sequence1:131327..131746(-)	internal_stop_codon	131327..131329(-)		WP_007330711.1	DNA topoisomerase IV subunit B	97.1	21.4	66.9
MGA_182	LOCUS_01810	sequence1:134951..135112(+)	internal_stop_codon	135359..135361(+),135203..135205(+),135377..135379(+),135110..135112(+)		WP_010874664.1	APC family permease	77.4	7.3	68.3
MGA_183	LOCUS_01820	sequence1:135434..135856(+)	partial			WP_011948975.1	amino acid permease	85.0	23.2	27.5
MGA_185	LOCUS_01840	sequence1:137269..137574(+)	internal_stop_codon	137572..137574(+),137647..137649(+)		WP_010874749.1	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	64.4	18.2	49.2
MGA_186	LOCUS_01850	sequence1:137695..137856(+)	internal_stop_codon	137572..137574(+),137854..137856(+),137893..137895(+),138079..138081(+),137647..137649(+),137860..137862(+)		WP_010874749.1	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	100.0	14.8	60.4
MGA_187	LOCUS_01860	sequence1:137953..138081(+)	internal_stop_codon	137854..137856(+),137893..137895(+),138079..138081(+),137860..137862(+)		WP_011182936.1	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	100.0	11.4	69.0
MGA_188	LOCUS_01870	sequence1:138166..138393(+)	internal_stop_codon	137893..137895(+),138079..138081(+)		WP_010874749.1	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	93.3	19.6	41.4
MGA_189	LOCUS_01880	sequence1:138648..139397(+)	internal_stop_codon	138567..138569(+),138486..138488(+)		WP_011182937.1	alpha-ketoacid dehydrogenase subunit beta	99.6	74.8	57.3
MGA_200	LOCUS_01990	sequence1:149168..149719(-)	internal_stop_codon	149756..149758(-)		WP_001204707.1	TrkH family potassium uptake protein	98.9	37.9	37.0
MGA_201	LOCUS_02000	sequence1:149756..150652(-)	internal_stop_codon	149756..149758(-)		WP_013447978.1	potassium transporter TrkG	94.3	53.5	33.2
MGA_206	LOCUS_02050	sequence1:153608..154126(-)	partial			WP_011183507.1	lipoprotein	99.4	44.9	26.7
MGA_208	LOCUS_02070	sequence1:155202..155384(+)	internal_stop_codon	155382..155384(+)		WP_008762997.1	polyamine ABC transporter ATP-binding protein	96.7	12.5	53.4
MGA_209	LOCUS_02080	sequence1:155907..156404(+)	internal_stop_codon	156402..156404(+),156486..156488(+)		WP_003437017.1	ABC transporter ATP-binding protein	99.4	47.6	47.9
MGA_211	LOCUS_02100	sequence1:156757..157086(+)	internal_stop_codon	157084..157086(+)		WP_005694014.1	spermidine/putrescine ABC transporter permease PotB	100.0	42.7	28.5
MGA_224	LOCUS_02230	sequence1:163143..163616(+)	internal_stop_codon	163068..163070(+)		WP_003686859.1	UMP kinase	100.0	64.9	45.9
MGA_229	LOCUS_02280	sequence1:166137..166847(+)	internal_stop_codon	166125..166127(+),166845..166847(+)		WP_011166548.1	PolC-type DNA polymerase III	100.0	16.3	42.4
MGA_230	LOCUS_02290	sequence1:167091..167765(+)	internal_stop_codon	167763..167765(+)		WP_003547817.1	PolC-type DNA polymerase III	99.6	14.3	33.0
MGA_231	LOCUS_02300	sequence1:167994..168419(+)	internal_stop_codon	168417..168419(+),167763..167765(+)		WP_011166548.1	PolC-type DNA polymerase III	97.2	8.6	52.6
MGA_232	LOCUS_02310	sequence1:168501..169034(+)	internal_stop_codon	169032..169034(+),168417..168419(+),169317..169319(+)		WP_011183185.1	PolC-type DNA polymerase III	98.3	11.7	51.7
MGA_235	LOCUS_02340	sequence1:169838..170491(+)	internal_stop_codon	170492..170494(+),170489..170491(+)		WP_000018268.1	glucose-6-phosphate isomerase	95.9	47.4	41.1
MGA_236	LOCUS_02350	sequence1:170570..170947(+)	internal_stop_codon	170492..170494(+),170489..170491(+)		WP_003243401.1	glucose-6-phosphate isomerase	100.0	27.6	54.4
MGA_238	LOCUS_02370	sequence1:171740..171937(+)	internal_stop_codon	171935..171937(+)		WP_010964858.1	peptide-methionine (R)-S-oxide reductase MsrB	100.0	44.5	61.5
MGA_239	LOCUS_02380	sequence1:171983..172174(+)	internal_stop_codon	171935..171937(+)		WP_011986743.1	peptide-methionine (R)-S-oxide reductase MsrB	93.7	39.6	67.8
MGA_240	LOCUS_02390	sequence1:172904..174841(-)	internal_stop_codon	172691..172693(-),172880..172882(-),172904..172906(-)		WP_005815130.1	DNA gyrase subunit A	91.0	71.0	51.0
MGA_245	LOCUS_02440	sequence1:177398..178513(+)	internal_stop_codon	178511..178513(+)		WP_010963778.1	endopeptidase La	60.9	28.8	25.7
MGA_246	LOCUS_02450	sequence1:178550..180016(+)	internal_stop_codon	178511..178513(+)		WP_011183303.1	endopeptidase La	99.2	57.6	54.2
MGA_247	LOCUS_02460	sequence1:180302..180877(+)	internal_stop_codon	180875..180877(+)		WP_002289463.1	elongation factor Tu	95.8	46.1	75.4
MGA_248	LOCUS_02470	sequence1:180899..181510(+)	internal_stop_codon	180875..180877(+)		WP_011227805.1	elongation factor Tu	100.0	50.0	68.5
MGA_264	LOCUS_02630	sequence1:193996..194259(+)	internal_stop_codon	193909..193911(+),194257..194259(+)		WP_010989921.1	oligoendopeptidase F	97.7	14.1	54.1
MGA_265	LOCUS_02640	sequence1:194278..194697(+)	internal_stop_codon	194257..194259(+)		WP_004453998.1	oligoendopeptidase F	90.6	20.9	34.1
MGA_274	LOCUS_02730	sequence1:200011..200445(-)	partial			WP_011085994.1	sugar ABC transporter permease	96.5	35.1	40.3
MGA_275	LOCUS_02740	sequence1:200632..200823(-)	internal_stop_codon	200869..200871(-),200572..200574(-),200632..200634(-)		WP_111696047.1	sugar ABC transporter permease	96.8	16.3	37.7
MGA_276	LOCUS_02750	sequence1:200869..201105(-)	internal_stop_codon	200869..200871(-)		WP_013226250.1	sugar ABC transporter permease	87.2	16.7	36.8
MGA_277	LOCUS_02760	sequence1:201231..202409(-)	internal_stop_codon	202416..202418(-)		WP_013533633.1	sugar ABC transporter ATP-binding protein	96.2	73.1	47.5
MGA_278	LOCUS_02770	sequence1:202416..202769(-)	internal_stop_codon	202416..202418(-)		WP_003976401.1	sugar ABC transporter ATP-binding protein	95.7	21.3	51.8
MGA_279	LOCUS_02780	sequence1:202909..203604(-)	partial			WP_003976402.1	sugar ABC transporter substrate-binding protein	89.2	47.7	30.6
MGA_282	LOCUS_02810	sequence1:206118..206756(+)	partial			WP_011182941.1	acetate kinase	99.5	52.5	46.5
MGA_283	LOCUS_02820	sequence1:207051..208136(-)	internal_stop_codon	207051..207053(-),208143..208145(-),208272..208274(-)		WP_011166465.1	dihydrolipoyl dehydrogenase	99.4	61.7	42.5
MGA_284	LOCUS_02830	sequence1:208272..208841(-)	internal_stop_codon	208143..208145(-),208272..208274(-)		WP_011166465.1	dihydrolipoyl dehydrogenase	100.0	27.2	39.7
MGA_285	LOCUS_02840	sequence1:208922..209308(-)	internal_stop_codon	208922..208924(-)		WP_010903647.1	dihydrolipoamide acetyltransferase family protein	95.3	25.5	46.7
MGA_293	LOCUS_02920	sequence1:215908..216447(+)	internal_stop_codon	216445..216447(+)		WP_001880879.1	oligopeptide ABC transporter permease OppB	92.7	52.3	31.7
MGA_294	LOCUS_02930	sequence1:216535..216888(+)	internal_stop_codon	216445..216447(+)		WP_013385397.1	ABC transporter permease	91.5	35.1	33.6
MGA_297	LOCUS_02960	sequence1:218098..218367(+)	internal_stop_codon	218365..218367(+)		WP_010874574.1	ABC transporter ATP-binding protein	87.6	18.2	51.3
MGA_298	LOCUS_02970	sequence1:218617..218874(+)	internal_stop_codon	219064..219066(+),218365..218367(+),218872..218874(+)		WP_010874574.1	ABC transporter ATP-binding protein	100.0	20.1	55.3
MGA_299	LOCUS_02980	sequence1:219147..219539(+)	internal_stop_codon	219537..219539(+)		WP_010874575.1	ATP-binding cassette domain-containing protein	86.2	13.2	45.5
MGA_301	LOCUS_03000	sequence1:220782..221459(+)	partial			WP_010874575.1	ATP-binding cassette domain-containing protein	92.0	24.1	46.4
MGA_316	LOCUS_03150	sequence1:237592..238287(-)	internal_stop_codon	238459..238461(-),238402..238404(-)		WP_008760658.1	class I mannose-6-phosphate isomerase	57.1	41.8	46.4
MGA_318	LOCUS_03170	sequence1:239522..239800(-)	internal_stop_codon	240062..240064(-),239522..239524(-)		WP_002357094.1	phosphoglycerate kinase	100.0	22.9	51.1
MGA_319	LOCUS_03180	sequence1:240062..240493(-)	internal_stop_codon	240062..240064(-)		WP_010989997.1	phosphoglycerate kinase	95.1	34.3	52.2
MGA_323	LOCUS_03220	sequence1:243656..244264(+)	partial			WP_011254229.1	diadenylate cyclase CdaA	70.3	51.1	48.3
MGA_324	LOCUS_03230	sequence1:244279..245142(+)	internal_stop_codon	245140..245142(+)		WP_011228410.1	magnesium transporter	81.9	55.1	30.2
MGA_325	LOCUS_03240	sequence1:245155..245742(+)	internal_stop_codon	245140..245142(+)		WP_005898141.1	magnesium transporter	77.4	28.9	33.8
MGA_328	LOCUS_03270	sequence1:247055..247375(-)	partial			WP_010890755.1	Cof-type HAD-IIB family hydrolase	94.3	36.4	37.1
MGA_339	LOCUS_03380	sequence1:253514..254146(+)	internal_stop_codon	253463..253465(+),254144..254146(+)		WP_011166795.1	ATP F0F1 synthase subunit alpha	99.5	40.6	52.6
MGA_340	LOCUS_03390	sequence1:254282..254938(+)	internal_stop_codon	254144..254146(+)		WP_011166795.1	ATP F0F1 synthase subunit alpha	83.5	34.8	45.1
MGA_344	LOCUS_03430	sequence1:257334..257618(+)	partial			WP_002263015.1	fructose-phosphate phosphohydrolase SppA	70.2	23.7	39.4
MGA_345	LOCUS_03440	sequence1:257622..257972(+)	internal_stop_codon	257970..257972(+)		WP_010964574.1	nicotinate-nucleotide adenylyltransferase	93.1	54.5	48.2
MGA_351	LOCUS_03500	sequence1:260326..260712(-)	internal_stop_codon	260839..260841(-),260326..260328(-)		WP_013447835.1	NAD(+) synthase	100.0	53.9	45.5
MGA_358	LOCUS_03570	sequence1:264393..265025(+)	internal_stop_codon	265023..265025(+),264342..264344(+)		WP_011166795.1	ATP F0F1 synthase subunit alpha	99.5	40.6	52.6
MGA_359	LOCUS_03580	sequence1:265161..265817(+)	internal_stop_codon	265023..265025(+)		WP_011166795.1	ATP F0F1 synthase subunit alpha	83.5	34.8	45.1
MGA_363	LOCUS_03620	sequence1:268213..268497(+)	partial			WP_002263015.1	fructose-phosphate phosphohydrolase SppA	70.2	23.7	39.4
MGA_364	LOCUS_03630	sequence1:268501..268851(+)	internal_stop_codon	268849..268851(+)		WP_010964574.1	nicotinate-nucleotide adenylyltransferase	93.1	54.5	48.2
MGA_370	LOCUS_03690	sequence1:271205..271591(-)	internal_stop_codon	271205..271207(-),271718..271720(-)		WP_013447835.1	NAD(+) synthase	100.0	53.9	45.5
MGA_371	LOCUS_03700	sequence1:271911..272135(-)	internal_stop_codon	272142..272144(-)		WP_100609812.1	phosphoenolpyruvate--protein phosphotransferase	90.5	11.7	52.2
MGA_372	LOCUS_03710	sequence1:272142..272657(-)	internal_stop_codon	272142..272144(-),272721..272723(-)		WP_003646541.1	phosphoenolpyruvate--protein phosphotransferase	100.0	29.3	66.1
MGA_373	LOCUS_03720	sequence1:272721..273647(-)	internal_stop_codon	272721..272723(-)		WP_011183417.1	phosphoenolpyruvate--protein phosphotransferase	98.4	53.4	42.8
MGA_377	LOCUS_03760	sequence1:275776..276132(+)	internal_stop_codon	275728..275730(+),276130..276132(+),276379..276381(+)		WP_011166520.1	ABC transporter permease	98.3	19.5	32.5
MGA_385	LOCUS_03840	sequence1:281811..282263(+)	partial			WP_001239380.1	tRNA (guanosine(46)-N7)-methyltransferase TrmB	99.3	68.7	41.3
MGA_386	LOCUS_03850	sequence1:282457..283551(+)	internal_stop_codon	283549..283551(+)		WP_011387085.1	M17 family metallopeptidase	91.2	74.3	39.7
MGA_387	LOCUS_03860	sequence1:283600..283830(+)	internal_stop_codon	283549..283551(+)		WP_027480002.1	leucyl aminopeptidase	100.0	16.6	43.4
MGA_419	LOCUS_04180	sequence1:315061..315438(-)	internal_stop_codon	315637..315639(-)		WP_011166761.1	RluA family pseudouridine synthase	88.8	35.8	44.3
MGA_420	LOCUS_04190	sequence1:315637..315963(-)	internal_stop_codon	315637..315639(-)		WP_015370269.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	85.2	28.2	35.5
MGA_422	LOCUS_04210	sequence1:316771..317115(-)	internal_stop_codon	317161..317163(-)		WP_011182943.1	FMN-dependent NADH-azoreductase	100.0	56.8	42.6
MGA_432	LOCUS_04310	sequence1:326389..327117(+)	partial			WP_011182916.1	ABC transporter ATP-binding protein	89.3	35.8	46.8
MGA_433	LOCUS_04320	sequence1:327202..328023(+)	internal_stop_codon	328288..328290(+),328021..328023(+)		WP_011166676.1	methionine adenosyltransferase	98.9	71.6	52.7
MGA_434	LOCUS_04330	sequence1:328758..328976(+)	internal_stop_codon	328974..328976(+)		WP_003245138.1	2',3'-cyclic-nucleotide 2'-phosphodiesterase	91.7	25.0	43.9
MGA_435	LOCUS_04340	sequence1:328995..329573(+)	internal_stop_codon	328974..328976(+)		WP_020862745.1	TIGR00282 family metallophosphoesterase	88.5	63.4	40.4
MGA_437	LOCUS_04360	sequence1:330188..330772(-)	internal_stop_codon	330188..330190(-)		WP_003687306.1	redox-regulated ATPase YchF	99.5	52.9	54.4
MGA_438	LOCUS_04370	sequence1:330782..331045(-)	partial			WP_012583715.1	30S ribosomal protein S18	74.7	77.4	63.1
MGA_457	LOCUS_04550	sequence1:345797..346771(+)	internal_stop_codon	345755..345757(+),345662..345664(+)		WP_164919801.1	APC family permease	81.5	48.0	22.9
MGA_461	LOCUS_04590	sequence1:348064..348369(-)	internal_stop_codon	348484..348486(-),348610..348612(-)		WP_012775048.1	glycerol kinase GlpK	98.0	19.6	41.4
MGA_462	LOCUS_04600	sequence1:349258..349389(-)	internal_stop_codon	349138..349140(-),349408..349410(-),349063..349065(-),349054..349056(-),349258..349260(-)		WP_010874407.1	glycerol kinase GlpK	100.0	8.5	67.4
MGA_463	LOCUS_04610	sequence1:349408..349596(-)	internal_stop_codon	349138..349140(-),349258..349260(-),349408..349410(-)		WP_000759995.1	glycerol kinase GlpK	80.6	10.1	60.0
MGA_465	LOCUS_04630	sequence1:350479..350691(+)	internal_stop_codon	350416..350418(+),350689..350691(+),350932..350934(+),350704..350706(+)		WP_010874771.1	high affinity transport system protein p37	100.0	16.8	38.6
MGA_469	LOCUS_04670	sequence1:352476..352664(+)	internal_stop_codon	352293..352295(+),352662..352664(+),352410..352412(+),352404..352406(+),352296..352298(+),352395..352397(+),352797..352799(+)		WP_020862930.1	ABC transporter permease subunit	95.2	10.1	49.2
MGA_477	LOCUS_04750	sequence1:357035..357703(-)	partial			WP_011202294.1	site-specific DNA-methyltransferase	63.1	23.6	39.0
MGA_478	LOCUS_04760	sequence1:357812..358306(-)	internal_stop_codon	358316..358318(-)		WP_211204934.1	site-specific DNA-methyltransferase	48.2	15.6	54.3
MGA_480	LOCUS_04780	sequence1:359407..359610(+)	internal_stop_codon	359671..359673(+),359338..359340(+),359248..359250(+),359626..359628(+),359608..359610(+)		WP_011183374.1	proline--tRNA ligase	100.0	14.2	52.2
MGA_481	LOCUS_04790	sequence1:360010..360639(+)	internal_stop_codon	359974..359976(+)		WP_010933157.1	proline--tRNA ligase	100.0	44.3	39.3
MGA_484	LOCUS_04820	sequence1:363718..364107(-)	internal_stop_codon	363718..363720(-)		WP_164919770.1	YigZ family protein	97.7	68.8	31.8
MGA_485	LOCUS_04830	sequence1:364324..364656(-)	internal_stop_codon	364261..364263(-),364309..364311(-),364657..364659(-),364324..364326(-)		WP_011166702.1	ABC transporter permease subunit	90.9	36.4	39.0
MGA_490	LOCUS_04880	sequence1:365856..366500(-)	internal_stop_codon	366714..366716(-),366603..366605(-),366741..366743(-)		WP_011166700.1	ABC transporter ATP-binding protein	97.7	51.5	50.7
MGA_491	LOCUS_04890	sequence1:366741..367016(-)	partial			WP_011166700.1	ABC transporter ATP-binding protein	98.9	23.6	43.8
MGA_493	LOCUS_04910	sequence1:368379..369029(+)	frameshift,internal_stop_codon	368283..368285(+)	368711	WP_011166703.1	hypothetical protein	91.7	31.5	30.0
MGA_494	LOCUS_04920	sequence1:369212..369538(+)	internal_stop_codon	369536..369538(+)		WP_205842938.1	phosphotriesterase	100.0	30.8	81.5
MGA_495	LOCUS_04930	sequence1:369572..370264(+)	internal_stop_codon	369536..369538(+)		WP_205842938.1	phosphotriesterase	100.0	65.5	80.0
MGA_496	LOCUS_04940	sequence1:370355..371404(+)	internal_stop_codon	371402..371404(+)		WP_010874852.1	PTS ascorbate transporter subunit IIC	89.4	48.6	49.2
MGA_497	LOCUS_04950	sequence1:371486..371785(+)	internal_stop_codon	372071..372073(+),371402..371404(+),371990..371992(+),371933..371935(+),371783..371785(+)		WP_010874852.1	PTS ascorbate transporter subunit IIC	100.0	15.0	75.8
MGA_499	LOCUS_04970	sequence1:372830..373126(+)	internal_stop_codon	372716..372718(+)		WP_012027941.1	PTS sugar transporter subunit IIA	99.0	59.6	42.3
MGA_507	LOCUS_05050	sequence1:379558..379737(-)	internal_stop_codon	379849..379851(-),379558..379560(-),379984..379986(-),379456..379458(-),379828..379830(-),379525..379527(-),379747..379749(-)		WP_010874493.1	carbohydrate ABC transporter permease	93.2	17.2	69.1
MGA_510	LOCUS_05080	sequence1:380207..380608(-)	internal_stop_codon	380648..380650(-),380831..380833(-)		WP_010874492.1	sugar ABC transporter permease	95.5	38.6	47.3
MGA_511	LOCUS_05090	sequence1:381217..381681(-)	internal_stop_codon	381748..381750(-)		WP_010874491.1	ABC transporter ATP-binding protein	100.0	26.3	43.3
MGA_512	LOCUS_05100	sequence1:381748..382431(-)	internal_stop_codon	381748..381750(-)		WP_010874491.1	ABC transporter ATP-binding protein	95.2	35.2	37.2
MGA_514	LOCUS_05120	sequence1:382972..383406(-)	internal_stop_codon	382972..382974(-)		WP_010874491.1	ABC transporter ATP-binding protein	70.1	17.2	67.3
MGA_523	LOCUS_05210	sequence1:389609..389755(+)	internal_stop_codon	389753..389755(+),389765..389767(+),389597..389599(+)		WP_211204934.1	site-specific DNA-methyltransferase	89.6	8.4	69.8
MGA_525	LOCUS_05230	sequence1:390407..390700(+)	partial			WP_011202294.1	site-specific DNA-methyltransferase	95.9	15.9	52.1
MGA_528	LOCUS_05260	sequence1:392120..392473(+)	partial			WP_011202294.1	site-specific DNA-methyltransferase	83.8	16.8	51.5
MGA_535	LOCUS_05330	sequence1:395989..396168(-)	internal_stop_codon	396424..396426(-),396226..396228(-),395989..395991(-),396334..396336(-)		WP_111723554.1	IS3-like element ISHin1 family transposase	100.0	12.9	64.4
MGA_536	LOCUS_05340	sequence1:396424..396849(-)	frameshift,internal_stop_codon	396857..396859(-),396226..396228(-),396334..396336(-),396424..396426(-)	396850	WP_211254473.1	IS3 family transposase	92.9	28.6	47.7
MGA_545	LOCUS_05430	sequence1:403020..403166(+)	internal_stop_codon	403164..403166(+),403008..403010(+)		WP_211204934.1	site-specific DNA-methyltransferase	100.0	9.3	64.6
MGA_552	LOCUS_05500	sequence1:409735..410076(+)	internal_stop_codon	410074..410076(+)		WP_010965432.1	division/cell wall cluster transcriptional repressor MraZ	92.9	73.9	40.0
MGA_553	LOCUS_05510	sequence1:410177..410395(+)	internal_stop_codon	410393..410395(+)		WP_003020492.1	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	77.8	18.4	58.9
MGA_554	LOCUS_05520	sequence1:410540..411064(+)	internal_stop_codon	410393..410395(+)		WP_011183293.1	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	99.4	59.7	41.1
MGA_560	LOCUS_05580	sequence1:414704..415024(+)	internal_stop_codon	415022..415024(+),415274..415276(+),415214..415216(+),414623..414625(+),414467..414469(+),415070..415072(+)		WP_010905562.1	methionine--tRNA ligase	95.3	16.2	39.8
MGA_561	LOCUS_05590	sequence1:415298..415549(+)	internal_stop_codon	415274..415276(+),415214..415216(+)		WP_010966273.1	methionine--tRNA ligase	90.4	11.6	41.3
MGA_564	LOCUS_05620	sequence1:416923..417498(-)	internal_stop_codon	416923..416925(-)		WP_003232030.1	ribonuclease III	85.3	69.1	34.9
MGA_569	LOCUS_05670	sequence1:420572..420946(+)	internal_stop_codon	420992..420994(+),420944..420946(+),421031..421033(+)		WP_010874849.1	3-dehydro-L-gulonate-6-phosphate decarboxylase	100.0	55.0	59.7
MGA_570	LOCUS_05680	sequence1:421215..421982(+)	internal_stop_codon	421980..421982(+)		WP_010874848.1	L-ribulose-5-phosphate 3-epimerase	100.0	83.9	50.8
MGA_571	LOCUS_05690	sequence1:422266..422424(+)	internal_stop_codon	422422..422424(+),422191..422193(+)		WP_010964650.1	L-ribulose-5-phosphate 4-epimerase	100.0	22.3	61.5
MGA_572	LOCUS_05700	sequence1:422614..422817(+)	internal_stop_codon	422422..422424(+)		WP_010874854.1	L-ribulose-5-phosphate 4-epimerase	97.0	26.9	61.5
MGA_574	LOCUS_05720	sequence1:423449..423688(+)	partial			WP_003245153.1	Cof-type HAD-IIB family hydrolase	92.4	28.4	39.7
MGA_575	LOCUS_05730	sequence1:423801..424160(+)	frameshift,internal_stop_codon	423768..423770(+),423750..423752(+)	424085	WP_010874855.1	hypothetical protein	76.5	56.4	30.4
MGA_582	LOCUS_05800	sequence1:427581..428303(-)	internal_stop_codon	428514..428516(-),428442..428444(-)		WP_001038006.1	tRNA 2-thiouridine(34) synthase MnmA	99.2	65.5	49.2
MGA_584	LOCUS_05820	sequence1:430073..430729(-)	internal_stop_codon	430823..430825(-),429920..429922(-),430073..430075(-),429986..429988(-),429968..429970(-)		WP_003245397.1	transketolase	99.5	35.2	47.9
MGA_585	LOCUS_05830	sequence1:430823..431269(-)	internal_stop_codon	431468..431470(-),431405..431407(-),430823..430825(-)		WP_002295818.1	transketolase	99.3	23.2	52.6
MGA_586	LOCUS_05840	sequence1:431468..431638(-)	internal_stop_codon	431468..431470(-),431405..431407(-)		WP_000193030.1	transketolase	92.9	7.8	44.2
MGA_591	LOCUS_05890	sequence1:433941..434351(+)	internal_stop_codon	434349..434351(+),433758..433760(+)		WP_000749795.1	protein translocase subunit SecDF	79.4	13.8	39.8
MGA_593	LOCUS_05910	sequence1:434862..435221(+)	internal_stop_codon	434814..434816(+)		WP_011404566.1	protein translocase subunit SecF	89.9	33.3	33.6
MGA_594	LOCUS_05920	sequence1:435430..436119(+)	internal_stop_codon	436117..436119(+)		WP_012583333.1	histidine--tRNA ligase	90.0	50.1	43.5
MGA_596	LOCUS_05940	sequence1:437087..437452(+)	internal_stop_codon	437450..437452(+)		WP_011166529.1	aspartate--tRNA ligase	100.0	21.3	59.8
MGA_598	LOCUS_05960	sequence1:438032..438412(+)	internal_stop_codon	437933..437935(+),437945..437947(+)		WP_001830852.1	aspartate--tRNA ligase	95.2	20.4	53.3
MGA_603	LOCUS_06010	sequence1:442876..443886(-)	internal_stop_codon	443902..443904(-)		WP_011166393.1	DUF853 family protein	88.4	38.0	32.4
MGA_604	LOCUS_06020	sequence1:443902..445266(-)	internal_stop_codon	443902..443904(-)		WP_000837852.1	ATPase AAA	58.4	35.8	22.4
MGA_611	LOCUS_06090	sequence1:449077..450021(+)	internal_stop_codon	450019..450021(+)		WP_002292812.1	phosphopyruvate hydratase	100.0	68.3	55.7
MGA_612	LOCUS_06100	sequence1:450145..450438(+)	internal_stop_codon	450019..450021(+)		WP_010889730.1	phosphopyruvate hydratase	97.9	21.5	66.3
MGA_614	LOCUS_06120	sequence1:450980..451453(+)	internal_stop_codon	451451..451453(+),450818..450820(+),451646..451648(+)		WP_002263348.1	serine--tRNA ligase	99.4	36.9	55.4
MGA_618	LOCUS_06160	sequence1:452708..453124(-)	partial			WP_011166713.1	alpha/beta hydrolase	76.8	41.7	36.6
MGA_619	LOCUS_06170	sequence1:453132..453347(-)	internal_stop_codon	453414..453416(-)		WP_010874745.1	lipoate--protein ligase	94.4	19.8	37.3
MGA_620	LOCUS_06180	sequence1:453414..454130(-)	internal_stop_codon	453414..453416(-)		WP_003722753.1	lipoate protein ligase LplA1	97.5	70.1	46.8
MGA_622	LOCUS_06200	sequence1:454601..455479(+)	partial			WP_003732084.1	DNA polymerase III subunit gamma/tau	96.2	49.1	46.8
MGA_627	LOCUS_06250	sequence1:457683..457931(+)	internal_stop_codon	457929..457931(+)		WP_010932982.1	dTMP kinase	100.0	36.4	43.9
MGA_629	LOCUS_06270	sequence1:458398..458712(+)	partial			WP_011963113.1	DNA polymerase III subunit gamma/tau	83.7	24.9	30.0
MGA_631	LOCUS_06290	sequence1:459183..459476(+)	internal_stop_codon	459474..459476(+)		WP_010963630.1	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	99.0	33.7	47.9
MGA_632	LOCUS_06300	sequence1:459507..459902(+)	internal_stop_codon	459474..459476(+)		WP_004081030.1	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	83.2	49.5	35.4
MGA_633	LOCUS_06310	sequence1:460068..460448(+)	internal_stop_codon	460020..460022(+),460446..460448(+)		WP_001019306.1	hypoxanthine phosphoribosyltransferase	100.0	72.0	50.0
MGA_634	LOCUS_06320	sequence1:460500..461294(+)	partial			WP_011183049.1	energy-coupling factor transporter ATPase	99.6	65.5	46.1
MGA_635	LOCUS_06330	sequence1:461291..461962(+)	partial			WP_004255782.1	energy-coupling factor ABC transporter ATP-binding protein	99.1	72.2	45.2
MGA_638	LOCUS_06360	sequence1:462627..463118(+)	partial			WP_011183051.1	energy-coupling factor transporter transmembrane component T	95.7	47.0	55.1
MGA_640	LOCUS_06380	sequence1:465382..465729(+)	internal_stop_codon	465727..465729(+)		WP_011861133.1	nucleotidyltransferase	98.3	26.8	47.4
MGA_642	LOCUS_06400	sequence1:466839..467171(-)	internal_stop_codon	466839..466841(-),467226..467228(-),467244..467246(-)		WP_001104785.1	calcium-translocating P-type ATPase, SERCA-type	100.0	12.1	50.9
MGA_643	LOCUS_06410	sequence1:467244..467819(-)	internal_stop_codon	467226..467228(-),467832..467834(-),467244..467246(-)		WP_002294372.1	cation-translocating P-type ATPase	91.6	20.7	30.3
MGA_644	LOCUS_06420	sequence1:467832..468947(-)	partial			WP_007054625.1	cation-translocating P-type ATPase	90.3	34.4	32.4
MGA_652	LOCUS_06500	sequence1:477197..477691(+)	internal_stop_codon	477689..477691(+)		WP_010874462.1	phenylalanine--tRNA ligase subunit alpha	95.1	46.9	36.9
MGA_653	LOCUS_06510	sequence1:477716..477877(+)	internal_stop_codon	477689..477691(+)		WP_011393252.1	phenylalanine--tRNA ligase subunit alpha	98.1	15.3	53.8
MGA_654	LOCUS_06520	sequence1:477884..478387(+)	internal_stop_codon	478385..478387(+)		WP_011166772.1	phenylalanine--tRNA ligase subunit beta	99.4	21.7	31.8
MGA_658	LOCUS_06560	sequence1:480895..481113(+)	internal_stop_codon	481111..481113(+)		WP_011016546.1	tRNA pseudouridine(55) synthase TruB	98.6	24.7	46.5
MGA_660	LOCUS_06580	sequence1:482315..482560(+)	partial			WP_000152854.1	HAD family hydrolase	82.7	24.4	50.7
MGA_671	LOCUS_06690	sequence1:488415..489248(+)	internal_stop_codon	489279..489281(+),489246..489248(+)		WP_012257008.1	CTP synthase	100.0	50.4	49.8
MGA_672	LOCUS_06700	sequence1:489564..490019(+)	partial			WP_037400472.1	CTP synthase	98.0	28.6	41.0
MGA_676	LOCUS_06740	sequence1:491250..492338(-)	frameshift,internal_stop_codon	492503..492505(-)	492545,492475	WP_012047858.1	type I DNA topoisomerase	95.3	49.3	35.9
MGA_677	LOCUS_06750	sequence1:492477..492854(-)	internal_stop_codon	492477..492479(-),492996..492998(-)		WP_000681408.1	type I DNA topoisomerase	95.2	17.8	41.8
MGA_686	LOCUS_06840	sequence1:499251..499559(-)	internal_stop_codon	499251..499253(-)		WP_010725220.1	Holliday junction branch migration protein RuvA	84.3	46.0	35.1
MGA_690	LOCUS_06880	sequence1:501088..502290(-)	internal_stop_codon	502312..502314(-)		WP_010989805.1	DNA helicase PcrA	97.5	52.3	28.7
MGA_691	LOCUS_06890	sequence1:502312..503349(-)	internal_stop_codon	502312..502314(-)		WP_011183464.1	UvrD-helicase domain-containing protein	91.9	42.6	46.1
MGA_694	LOCUS_06920	sequence1:505765..506598(+)	internal_stop_codon	506596..506598(+)		WP_004597016.1	serine hydroxymethyltransferase	97.1	64.3	61.5
MGA_695	LOCUS_06930	sequence1:506623..507015(+)	internal_stop_codon	506596..506598(+)		WP_004081014.1	serine hydroxymethyltransferase	98.5	30.9	46.6
MGA_697	LOCUS_06950	sequence1:508266..509033(+)	internal_stop_codon	508164..508166(+),508104..508106(+),508227..508229(+),508140..508142(+),508206..508208(+)		WP_011183428.1	class 1b ribonucleoside-diphosphate reductase subunit beta	100.0	75.0	80.8
MGA_699	LOCUS_06970	sequence1:509503..509784(+)	internal_stop_codon	509782..509784(+)		WP_010874680.1	class 1b ribonucleoside-diphosphate reductase subunit alpha	90.3	11.2	47.1
MGA_700	LOCUS_06980	sequence1:509812..511212(+)	internal_stop_codon	511210..511212(+),509782..509784(+)		WP_011183426.1	class 1b ribonucleoside-diphosphate reductase subunit alpha	100.0	64.9	70.5
MGA_701	LOCUS_06990	sequence1:511264..511665(+)	internal_stop_codon	511210..511212(+)		WP_010874680.1	class 1b ribonucleoside-diphosphate reductase subunit alpha	100.0	19.0	75.2
MGA_703	LOCUS_07010	sequence1:512126..512311(-)	internal_stop_codon	512429..512431(-),512351..512353(-),512405..512407(-)		WP_011166423.1	50S ribosomal protein L20	88.5	44.6	63.0
MGA_706	LOCUS_07040	sequence1:513589..514068(-)	internal_stop_codon	514096..514098(-)		WP_011166458.1	pyruvate kinase	95.0	31.2	43.0
MGA_707	LOCUS_07050	sequence1:514096..515025(-)	internal_stop_codon	514096..514098(-)		WP_011183072.1	pyruvate kinase	97.1	62.8	56.3
MGA_709	LOCUS_07070	sequence1:515550..515915(-)	internal_stop_codon	515550..515552(-)		WP_013246158.1	MBG domain-containing protein	89.3	5.5	39.1
MGA_711	LOCUS_07090	sequence1:516343..517053(-)	internal_stop_codon	517144..517146(-)		WP_048065828.1	M42 family metallopeptidase	92.4	61.5	36.6
MGA_712	LOCUS_07100	sequence1:517144..517413(-)	internal_stop_codon	517144..517146(-)		WP_010870059.1	M42 family metallopeptidase	100.0	24.9	42.7
MGA_714	LOCUS_07120	sequence1:517729..518169(-)	internal_stop_codon	517729..517731(-)		WP_011963183.1	uracil-DNA glycosylase	89.7	60.5	53.4
MGA_717	LOCUS_07150	sequence1:519072..519707(-)	internal_stop_codon	519762..519764(-)		WP_011166713.1	alpha/beta hydrolase	99.5	80.1	38.0
MGA_720	LOCUS_07180	sequence1:521767..522180(+)	internal_stop_codon	521554..521556(+),522184..522186(+),521668..521670(+),521713..521715(+),521512..521514(+),522178..522180(+),522205..522207(+)		WP_011166327.1	MFS transporter	99.3	28.9	41.8
MGA_728	LOCUS_07260	sequence1:527207..527629(+)	internal_stop_codon	527627..527629(+)		WP_003546735.1	peptide chain release factor 1	97.9	38.0	38.7
MGA_729	LOCUS_07270	sequence1:527651..528292(+)	internal_stop_codon	527627..527629(+)		WP_011166352.1	peptide chain release factor 1	100.0	58.8	57.2
MGA_730	LOCUS_07280	sequence1:528279..528869(+)	partial			WP_010905456.1	peptide chain release factor N(5)-glutamine methyltransferase	96.4	71.1	36.5
MGA_731	LOCUS_07290	sequence1:529028..529216(+)	internal_stop_codon	529214..529216(+),529427..529429(+)		WP_002287447.1	glutamate--tRNA ligase	96.8	12.3	76.7
MGA_733	LOCUS_07310	sequence1:530825..531016(+)	internal_stop_codon	531014..531016(+)		WP_010964019.1	tRNA (cytidine(34)-2'-O)-methyltransferase	71.4	28.1	64.4
MGA_734	LOCUS_07320	sequence1:531050..531349(+)	internal_stop_codon	531014..531016(+)		WP_011183273.1	tRNA (cytidine(34)-2'-O)-methyltransferase	97.0	52.0	52.1
MGA_735	LOCUS_07330	sequence1:531480..532094(+)	internal_stop_codon	531423..531425(+)		WP_005898090.1	RNA methyltransferase	93.1	74.6	35.2
MGA_741	LOCUS_07390	sequence1:537993..538481(-)	internal_stop_codon	537993..537995(-)		WP_011166502.1	ribulose-phosphate 3-epimerase	99.4	74.2	36.5
MGA_742	LOCUS_07400	sequence1:538462..538938(-)	internal_stop_codon	538957..538959(-)		WP_014568296.1	ribosome small subunit-dependent GTPase A	91.8	47.4	41.8
MGA_743	LOCUS_07410	sequence1:538957..539319(-)	internal_stop_codon	538957..538959(-)		WP_012027877.1	ribosome small subunit-dependent GTPase A	95.0	39.5	49.2
MGA_744	LOCUS_07420	sequence1:539689..539901(-)	internal_stop_codon	539689..539691(-)		WP_011166418.1	guanylate kinase	78.6	18.5	50.9
MGA_751	LOCUS_07490	sequence1:544051..544500(-)	internal_stop_codon	544051..544053(-)		WP_011949183.1	ABC transporter ATP-binding protein	71.8	20.7	37.4
MGA_753	LOCUS_07510	sequence1:545374..545817(-)	partial			WP_015704147.1	peptidase domain-containing ABC transporter	97.3	19.4	25.9
MGA_755	LOCUS_07530	sequence1:546169..546468(+)	internal_stop_codon	546466..546468(+),546037..546039(+)		WP_003230444.1	phosphopentomutase	93.9	23.4	53.8
MGA_756	LOCUS_07540	sequence1:546580..547086(+)	internal_stop_codon	546466..546468(+)		WP_010905637.1	phosphopentomutase	99.4	40.4	40.7
MGA_760	LOCUS_07580	sequence1:549267..549632(+)	internal_stop_codon	549771..549773(+),549630..549632(+)		WP_129622721.1	aminotransferase class V-fold PLP-dependent enzyme	93.4	29.5	49.1
MGA_761	LOCUS_07590	sequence1:550128..550424(+)	internal_stop_codon	550056..550058(+)		WP_129622721.1	aminotransferase class V-fold PLP-dependent enzyme	91.8	23.3	47.8
MGA_763	LOCUS_07610	sequence1:550826..551017(+)	internal_stop_codon	551015..551017(+)		WP_010880947.1	pseudouridine synthase	82.5	21.7	53.7
MGA_764	LOCUS_07620	sequence1:551084..551359(+)	internal_stop_codon	551015..551017(+),551357..551359(+)		WP_009872100.1	pseudouridine synthase	90.1	34.0	41.5
MGA_765	LOCUS_07630	sequence1:551682..551912(-)	internal_stop_codon	552003..552005(-)		WP_005112004.1	50S ribosomal protein L17	97.4	37.6	59.5
MGA_766	LOCUS_07640	sequence1:552047..552385(-)	internal_stop_codon	552407..552409(-)		WP_003225835.1	DNA-directed RNA polymerase subunit alpha	89.3	31.2	36.0
MGA_767	LOCUS_07650	sequence1:552407..553045(-)	internal_stop_codon	552407..552409(-)		WP_011166890.1	DNA-directed RNA polymerase subunit alpha	88.2	56.2	34.2
MGA_768	LOCUS_07660	sequence1:553076..553222(-)	internal_stop_codon	553325..553327(-)		WP_003701334.1	30S ribosomal protein S11	100.0	37.5	50.0
MGA_774	LOCUS_07720	sequence1:555891..556340(-)	internal_stop_codon	556353..556355(-)		WP_011166894.1	preprotein translocase subunit SecY	81.2	25.3	28.7
MGA_775	LOCUS_07730	sequence1:556353..556784(-)	internal_stop_codon	556806..556808(-),556353..556355(-)		WP_011166894.1	preprotein translocase subunit SecY	94.4	28.4	46.7
MGA_776	LOCUS_07740	sequence1:556806..557123(-)	internal_stop_codon	556806..556808(-)		WP_000465397.1	preprotein translocase subunit SecY	96.2	23.2	37.6
MGA_778	LOCUS_07760	sequence1:558039..558818(-)	partial			WP_011166896.1	30S ribosomal protein S5	62.9	63.8	52.1
MGA_782	LOCUS_07800	sequence1:560374..560634(-)	internal_stop_codon	560689..560691(-)		WP_011228843.1	50S ribosomal protein L5	97.7	46.2	57.1
MGA_783	LOCUS_07810	sequence1:560689..560919(-)	internal_stop_codon	560689..560691(-)		WP_001080831.1	50S ribosomal protein L5	98.7	41.9	48.0
MGA_798	LOCUS_07960	sequence1:568312..568593(-)	internal_stop_codon	568636..568638(-),568702..568704(-)		WP_012546112.1	16S rRNA (uracil(1498)-N(3))-methyltransferase	94.6	37.7	42.4
MGA_800	LOCUS_07980	sequence1:569206..569418(+)	internal_stop_codon	569545..569547(+),569485..569487(+),569110..569112(+),569416..569418(+),569671..569673(+),569191..569193(+)		WP_011183510.1	alanine--tRNA ligase	97.1	7.6	72.1
MGA_801	LOCUS_07990	sequence1:569707..570033(+)	internal_stop_codon	569671..569673(+),569545..569547(+),569485..569487(+),570031..570033(+)		WP_011183510.1	alanine--tRNA ligase	97.2	12.0	62.6
MGA_802	LOCUS_08000	sequence1:570079..570600(+)	internal_stop_codon	570031..570033(+),570598..570600(+)		WP_002440135.1	alanine--tRNA ligase	90.8	18.4	34.8
MGA_803	LOCUS_08010	sequence1:570988..571173(+)	partial			WP_011166380.1	alanine--tRNA ligase	80.3	5.5	46.9
MGA_806	LOCUS_08040	sequence1:572502..572876(+)	internal_stop_codon	572391..572393(+)		WP_011836278.1	aminoacyl-tRNA hydrolase	95.2	64.6	38.5
MGA_807	LOCUS_08050	sequence1:572854..573717(+)	partial			WP_011183569.1	tRNA lysidine(34) synthetase TilS	61.7	45.5	40.1
MGA_809	LOCUS_08070	sequence1:574588..575544(+)	internal_stop_codon	574378..574380(+),575542..575544(+)		WP_011183568.1	ATP-dependent zinc metalloprotease FtsH	99.1	48.2	61.3
MGA_810	LOCUS_08080	sequence1:575548..575922(+)	internal_stop_codon	575542..575544(+)		WP_002363441.1	ATP-dependent zinc metalloprotease FtsH	96.0	16.6	34.7
MGA_812	LOCUS_08100	sequence1:577512..577877(+)	partial			WP_029494826.1	HAD family hydrolase	76.0	35.6	33.7
MGA_813	LOCUS_08110	sequence1:578049..578342(+)	partial			WP_003546391.1	Cof-type HAD-IIB family hydrolase	83.5	29.8	39.5
MGA_814	LOCUS_08120	sequence1:578415..579383(-)	internal_stop_codon	579465..579467(-),578415..578417(-)		WP_003131240.1	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	96.3	69.7	39.9
MGA_816	LOCUS_08140	sequence1:579702..580040(-)	internal_stop_codon	580101..580103(-),580089..580091(-),580179..580181(-)		WP_000942303.1	ATP-binding cassette domain-containing protein	98.2	20.6	44.5
MGA_817	LOCUS_08150	sequence1:580179..580580(-)	internal_stop_codon	580740..580742(-),580101..580103(-),580179..580181(-),580089..580091(-),580599..580601(-)		WP_003702586.1	ATP-binding cassette domain-containing protein	98.5	23.9	54.2
MGA_818	LOCUS_08160	sequence1:580932..581318(-)	internal_stop_codon	580740..580742(-),580932..580934(-),580872..580874(-)		WP_002899531.1	ATP-binding cassette domain-containing protein	100.0	23.7	57.8
MGA_819	LOCUS_08170	sequence1:581708..583126(+)	internal_stop_codon	583208..583210(+),583400..583402(+),583124..583126(+)		WP_010874435.1	fructose-specific PTS transporter subunit EIIC	96.8	66.3	40.5
MGA_820	LOCUS_08180	sequence1:583235..583402(+)	internal_stop_codon	583208..583210(+),583400..583402(+),583124..583126(+)		WP_011014766.1	fructose-specific PTS transporter subunit EIIC	100.0	8.3	56.1
MGA_830	LOCUS_08280	sequence1:587156..587368(+)	internal_stop_codon	587099..587101(+)		WP_011167114.1	ABC transporter permease	98.6	19.3	60.9
MGA_831	LOCUS_08290	sequence1:587461..587718(+)	internal_stop_codon	587959..587961(+),587926..587928(+),587716..587718(+),587728..587730(+),587452..587454(+)		WP_011167115.1	ABC transporter permease	80.0	20.2	51.5
MGA_832	LOCUS_08300	sequence1:588335..588943(+)	internal_stop_codon	588941..588943(+)		WP_011167116.1	ABC transporter ATP-binding protein	55.4	24.9	49.2
MGA_833	LOCUS_08310	sequence1:588995..589456(+)	internal_stop_codon	589454..589456(+),588941..588943(+)		WP_011167116.1	ABC transporter ATP-binding protein	100.0	31.8	73.2
MGA_834	LOCUS_08320	sequence1:589472..589705(+)	internal_stop_codon	589454..589456(+)		WP_011167116.1	ABC transporter ATP-binding protein	96.1	15.4	66.2
MGA_838	LOCUS_08360	sequence1:592960..593496(+)	internal_stop_codon	593494..593496(+)		WP_011167112.1	PDxFFG protein	97.2	10.3	32.4
MGA_846	LOCUS_08440	sequence1:600553..600969(-)	internal_stop_codon	601099..601101(-)		WP_011166228.1	mannitol-1-phosphate 5-dehydrogenase	97.8	41.2	30.5
MGA_847	LOCUS_08450	sequence1:601099..601503(-)	internal_stop_codon	601099..601101(-)		WP_010875009.1	mannitol-1-phosphate 5-dehydrogenase	96.3	34.9	41.1
MGA_849	LOCUS_08470	sequence1:601800..602552(-)	internal_stop_codon	601800..601802(-),602580..602582(-)		WP_017532717.1	PTS mannitol transporter subunit IICB	85.6	53.1	54.2
MGA_850	LOCUS_08480	sequence1:602580..602816(-)	internal_stop_codon	602580..602582(-)		WP_017532717.1	PTS mannitol transporter subunit IICB	57.7	11.1	60.0
MGA_852	LOCUS_08500	sequence1:604424..605584(-)	internal_stop_codon	604424..604426(-)		WP_011183539.1	PTS ascorbate transporter subunit IIC	99.7	75.5	39.3
MGA_882	LOCUS_08800	sequence1:621273..621596(+)	partial			WP_012545685.1	DegQ family serine endoprotease	86.9	20.2	35.4
MGA_888	LOCUS_08850	sequence1:623670..624608(-)	internal_stop_codon	623670..623672(-)		WP_143254459.1	DEAD/DEAH box helicase family protein	92.3	46.2	44.2
MGA_889	LOCUS_08860	sequence1:624949..625563(-)	frameshift		624983,625823	WP_011166726.1	dihydrolipoyl dehydrogenase	93.6	43.1	44.4
MGA_894	LOCUS_08910	sequence1:627881..628447(-)	internal_stop_codon	627881..627883(-)		WP_011392146.1	class II fructose-1,6-bisphosphate aldolase	100.0	66.9	35.8
MGA_895	LOCUS_08920	sequence1:628447..628881(-)	internal_stop_codon	628903..628905(-),629065..629067(-)		WP_011166334.1	PTS transporter subunit EIIC	98.6	22.3	42.3
MGA_896	LOCUS_08930	sequence1:629065..629334(-)	internal_stop_codon	629545..629547(-),629551..629553(-),629395..629397(-),628903..628905(-),629065..629067(-)		WP_011166334.1	PTS transporter subunit EIIC	95.5	15.3	50.6
MGA_897	LOCUS_08940	sequence1:629551..629859(-)	internal_stop_codon	629545..629547(-),629395..629397(-),629551..629553(-),629866..629868(-)		WP_011166334.1	PTS transporter subunit EIIC	100.0	19.4	49.1
MGA_898	LOCUS_08950	sequence1:629866..630231(-)	internal_stop_codon	629866..629868(-)		WP_011166334.1	PTS transporter subunit EIIC	87.6	18.9	62.3
MGA_900	LOCUS_08970	sequence1:631386..631892(+)	internal_stop_codon	631890..631892(+)		WP_011166475.1	30S ribosomal protein S4	96.4	76.9	62.8
MGA_905	LOCUS_09020	sequence1:635296..635754(-)	internal_stop_codon	635863..635865(-)		WP_004398870.1	DNA polymerase I	74.3	13.0	28.9
MGA_908	LOCUS_09050	sequence1:636605..637252(-)	internal_stop_codon	637325..637327(-)		WP_002485290.1	DNA polymerase III subunit alpha	94.0	18.8	43.6
MGA_909	LOCUS_09060	sequence1:637325..638185(-)	internal_stop_codon	638255..638257(-),637325..637327(-),638342..638344(-)		WP_000673716.1	DNA polymerase III subunit alpha	97.9	24.6	41.3
MGA_910	LOCUS_09070	sequence1:638537..639115(-)	partial			WP_011017116.1	DNA polymerase III subunit alpha	96.9	16.0	30.7
MGA_912	LOCUS_09090	sequence1:639677..640495(-)	internal_stop_codon	639677..639679(-),640568..640570(-)		WP_000036341.1	translation initiation factor IF-2	100.0	41.1	42.2
MGA_913	LOCUS_09100	sequence1:640568..641305(-)	internal_stop_codon	640568..640570(-)		WP_011166542.1	translation initiation factor IF-2	99.2	39.7	54.5
MGA_916	LOCUS_09130	sequence1:642261..642857(-)	frameshift,internal_stop_codon	643029..643031(-),642927..642929(-)	642835,642813,642902	WP_003565788.1	transcription termination factor NusA	86.9	40.0	37.2
MGA_920	LOCUS_09170	sequence1:644877..645989(+)	internal_stop_codon	644652..644654(+)		WP_010965967.1	type I pullulanase	80.0	35.6	25.4
MGA_921	LOCUS_09180	sequence1:646534..646770(-)	internal_stop_codon	646834..646836(-)		WP_000591012.1	threonine--tRNA ligase	92.3	11.1	37.5
MGA_922	LOCUS_09190	sequence1:646834..647121(-)	internal_stop_codon	646834..646836(-),647140..647142(-)		WP_011183074.1	threonine--tRNA ligase	98.9	14.6	60.6
MGA_923	LOCUS_09200	sequence1:647140..647646(-)	internal_stop_codon	647659..647661(-),647140..647142(-),647842..647844(-)		WP_011183074.1	threonine--tRNA ligase	98.8	26.2	46.2
MGA_924	LOCUS_09210	sequence1:647842..648273(-)	internal_stop_codon	647659..647661(-),647842..647844(-)		WP_000435143.1	threonine--tRNA ligase	94.4	20.5	43.2
MGA_925	LOCUS_09220	sequence1:648277..648981(-)	internal_stop_codon	648985..648987(-)		WP_000110984.1	tryptophan--tRNA ligase	100.0	70.5	43.0
MGA_926	LOCUS_09230	sequence1:648985..649260(-)	internal_stop_codon	648985..648987(-)		WP_011125215.1	tryptophan--tRNA ligase	97.8	26.3	52.8
MGA_930	LOCUS_09270	sequence1:650912..651841(+)	frameshift,internal_stop_codon	652082..652084(+),650781..650783(+),651839..651841(+)	650726	WP_010874510.1	AAA domain-containing protein	90.9	25.8	25.4
MGA_931	LOCUS_09280	sequence1:652121..652498(+)	internal_stop_codon	652082..652084(+),651839..651841(+)		WP_053061269.1	DUF3320 domain-containing protein	100.0	7.4	31.7
MGA_934	LOCUS_09310	sequence1:653806..653943(+)	partial			WP_014574997.1	YneF family protein	97.8	60.3	63.6
MGA_935	LOCUS_09320	sequence1:653959..655230(+)	internal_stop_codon	655228..655230(+)		WP_010874985.1	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	98.1	81.9	50.0
MGA_936	LOCUS_09330	sequence1:655237..655476(+)	internal_stop_codon	655228..655230(+)		WP_010874985.1	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	98.7	15.7	48.8
MGA_940	LOCUS_09370	sequence1:658365..658526(+)	internal_stop_codon	658716..658718(+),658758..658760(+),658524..658526(+)		WP_001047373.1	inorganic diphosphatase	96.2	29.5	60.8
MGA_945	LOCUS_09420	sequence1:662373..662693(+)	internal_stop_codon	662871..662873(+),662691..662693(+)		WP_003723915.1	ABC transporter permease	75.5	22.9	41.2
MGA_950	LOCUS_09470	sequence1:663905..664375(+)	internal_stop_codon	664373..664375(+),664475..664477(+)		WP_012775589.1	ABC transporter permease	71.2	34.7	32.1
MGA_953	LOCUS_09500	sequence1:666195..666884(+)	internal_stop_codon	666888..666890(+),666882..666884(+)		WP_011166265.1	PTS transporter subunit EIIC	90.4	32.8	36.2
MGA_954	LOCUS_09510	sequence1:667356..667670(+)	internal_stop_codon	667668..667670(+)		WP_010874564.1	PTS transporter subunit IIABC	92.3	10.2	49.0
MGA_955	LOCUS_09520	sequence1:668016..668675(+)	partial			WP_011475494.1	sucrose-specific PTS transporter subunit IIBC	66.2	20.7	41.4
MGA_956	LOCUS_09530	sequence1:668961..669527(-)	internal_stop_codon	669546..669548(-)		WP_011166809.1	DUF31 family protein	94.7	21.3	36.3
MGA_961	LOCUS_09580	sequence1:672183..672419(-)	internal_stop_codon	672645..672647(-),672600..672602(-),672060..672062(-),672183..672185(-)		WP_020862865.1	putative immunoglobulin-blocking virulence protein	98.7	10.4	42.3
MGA_965	LOCUS_09620	sequence1:675263..675550(+)	internal_stop_codon	675548..675550(+)		WP_003900992.1	DNA-directed RNA polymerase subunit beta	97.9	7.8	45.2
MGA_966	LOCUS_09630	sequence1:675551..676141(+)	internal_stop_codon	676139..676141(+)		WP_010874872.1	DNA-directed RNA polymerase subunit beta	56.1	7.6	33.6
MGA_967	LOCUS_09640	sequence1:676157..676783(+)	internal_stop_codon	676139..676141(+),676781..676783(+)		WP_011167152.1	DNA-directed RNA polymerase subunit beta	98.1	15.7	54.9
MGA_968	LOCUS_09650	sequence1:676940..677365(+)	internal_stop_codon	677363..677365(+),676781..676783(+)		WP_013385331.1	DNA-directed RNA polymerase subunit beta	97.9	10.5	56.8
MGA_969	LOCUS_09660	sequence1:677648..678310(+)	internal_stop_codon	677363..677365(+),678308..678310(+)		WP_011393945.1	DNA-directed RNA polymerase subunit beta	99.5	19.2	64.4
MGA_970	LOCUS_09670	sequence1:679500..679817(+)	internal_stop_codon	679815..679817(+)		WP_011056488.1	DNA-directed RNA polymerase subunit gamma	88.6	13.0	47.3
MGA_971	LOCUS_09680	sequence1:679857..680114(+)	internal_stop_codon	679815..679817(+),680112..680114(+)		WP_010931850.1	DNA-directed RNA polymerase subunit beta'	98.8	5.6	72.6
MGA_972	LOCUS_09690	sequence1:680172..681392(+)	internal_stop_codon	680112..680114(+),681390..681392(+)		WP_010874871.1	DNA-directed RNA polymerase subunit beta'	85.2	25.4	39.1
MGA_973	LOCUS_09700	sequence1:681471..682229(+)	internal_stop_codon	682227..682229(+),681390..681392(+)		WP_011183495.1	DNA-directed RNA polymerase subunit beta'	97.2	18.5	58.0
MGA_974	LOCUS_09710	sequence1:682392..682964(+)	internal_stop_codon	682227..682229(+)		WP_011183495.1	DNA-directed RNA polymerase subunit beta'	87.4	13.2	48.8
MGA_975	LOCUS_09720	sequence1:682969..683382(+)	partial			WP_012583329.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	69.3	67.3	35.2
MGA_978	LOCUS_09750	sequence1:685243..685530(+)	internal_stop_codon	685564..685566(+),685528..685530(+),685543..685545(+),685066..685068(+),684985..684987(+),685111..685113(+),685720..685722(+)		WP_011166804.1	putative immunoglobulin-blocking virulence protein	96.8	12.5	52.1
MGA_979	LOCUS_09760	sequence1:685741..686262(+)	internal_stop_codon	685543..685545(+),685564..685566(+),685528..685530(+),685720..685722(+)		WP_011387230.1	putative immunoglobulin-blocking virulence protein	98.3	22.0	44.4
MGA_981	LOCUS_09780	sequence1:688087..688758(+)	internal_stop_codon	688084..688086(+)		WP_020862862.1	DUF31 family protein	96.0	22.1	47.0
MGA_985	LOCUS_09820	sequence1:690808..691062(+)	internal_stop_codon	691060..691062(+)		WP_002681273.1	ABC transporter ATP-binding protein	98.8	15.5	41.0
MGA_986	LOCUS_09830	sequence1:691096..691377(+)	internal_stop_codon	691060..691062(+)		WP_002680518.1	ABC transporter ATP-binding protein	77.4	13.0	38.9
MGA_989	LOCUS_09860	sequence1:692364..693005(+)	partial			WP_002681273.1	ABC transporter ATP-binding protein	94.8	39.3	35.9
MGA_990	LOCUS_09870	sequence1:693093..693566(-)	internal_stop_codon	693597..693599(-)		WP_011166468.1	DUF31 family protein	95.5	23.0	41.3
MGA_991	LOCUS_09880	sequence1:693597..694394(-)	internal_stop_codon	693597..693599(-),694398..694400(-)		WP_011166468.1	DUF31 family protein	96.2	38.2	43.0
MGA_994	LOCUS_09910	sequence1:695307..695606(-)	internal_stop_codon	695307..695309(-)		WP_027479713.1	bifunctional metallophosphatase/5'-nucleotidase	84.8	16.4	37.2
MGA_995	LOCUS_09920	sequence1:696390..697070(-)	internal_stop_codon	696195..696197(-),696390..696392(-)		WP_000645787.1	LPXTG-anchored adenosine synthase AdsA	50.0	13.3	41.6
MGA_998	LOCUS_09950	sequence1:698102..698662(+)	internal_stop_codon	698660..698662(+)		WP_000273371.1	segregation/condensation protein A	96.8	70.8	32.4
MGA_1004	LOCUS_10010	sequence1:702253..702786(-)	internal_stop_codon	702805..702807(-)		WP_011183382.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	92.7	50.5	47.3
MGA_1005	LOCUS_10020	sequence1:702805..703227(-)	internal_stop_codon	702805..702807(-)		WP_011166293.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	99.3	43.9	45.0
MGA_1007	LOCUS_10040	sequence1:704215..704544(-)	partial			WP_003567176.1	transcription termination/antitermination protein NusG	89.9	51.6	37.8
MGA_1010	LOCUS_10070	sequence1:705811..706275(-)	internal_stop_codon	705811..705813(-)		WP_000093759.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	98.1	66.8	30.3
MGA_1012	LOCUS_10090	sequence1:706966..707523(-)	internal_stop_codon	706966..706968(-),706816..706818(-)		WP_011182984.1	cysteine--tRNA ligase	99.5	42.4	42.9
MGA_1014	LOCUS_10110	sequence1:708324..708689(-)	internal_stop_codon	708714..708716(-)		WP_004080781.1	hemolysin family protein	93.4	24.4	31.0
MGA_1016	LOCUS_10130	sequence1:709409..710092(-)	internal_stop_codon	710138..710140(-)		WP_000375647.1	replicative DNA helicase	94.7	47.2	41.3
MGA_1017	LOCUS_10140	sequence1:710138..710800(-)	internal_stop_codon	710138..710140(-)		WP_003226923.1	replicative DNA helicase	95.9	46.3	30.5
MGA_1020	LOCUS_10170	sequence1:711718..712665(-)	internal_stop_codon	711718..711720(-),711619..711621(-)		WP_003643610.1	DHH family phosphoesterase	95.2	43.1	25.7
MGA_1023	LOCUS_10200	sequence1:713440..713736(-)	internal_stop_codon	713779..713781(-),713746..713748(-),713440..713442(-),713992..713994(-)		WP_003132571.1	leucine--tRNA ligase	82.7	9.7	35.8
MGA_1024	LOCUS_10210	sequence1:713779..713919(-)	internal_stop_codon	713779..713781(-),713746..713748(-),714145..714147(-),714061..714063(-),714160..714162(-),713992..713994(-)		WP_010874740.1	leucine--tRNA ligase	91.3	5.3	71.4
MGA_1025	LOCUS_10220	sequence1:714379..714792(-)	internal_stop_codon	714355..714357(-),714379..714381(-),714145..714147(-),714913..714915(-),714892..714894(-),714160..714162(-)		WP_010874740.1	leucine--tRNA ligase	99.3	17.5	36.0
MGA_1026	LOCUS_10230	sequence1:715771..716418(+)	internal_stop_codon	716416..716418(+)		WP_012028187.1	excinuclease ABC subunit UvrB	94.0	30.6	51.5
MGA_1027	LOCUS_10240	sequence1:716773..717774(+)	partial			WP_000229241.1	excinuclease ABC subunit UvrB	98.8	50.2	50.9
MGA_1040	LOCUS_10370	sequence1:725660..725797(+)	internal_stop_codon	725795..725797(+)		WP_000478987.1	chromosome segregation protein SMC	100.0	3.8	60.0
MGA_1044	LOCUS_10410	sequence1:730073..730510(+)	internal_stop_codon	730508..730510(+)		WP_001045361.1	N-6 DNA methylase	87.6	19.6	44.4
MGA_1045	LOCUS_10420	sequence1:730670..731095(+)	internal_stop_codon	730508..730510(+),731093..731095(+),731198..731200(+)		WP_001045361.1	N-6 DNA methylase	96.5	20.2	51.8
MGA_1046	LOCUS_10430	sequence1:731240..731941(+)	internal_stop_codon	731093..731095(+),731939..731941(+),732014..732016(+),731198..731200(+)		WP_001045361.1	N-6 DNA methylase	100.0	35.1	61.8
MGA_1048	LOCUS_10450	sequence1:732632..733354(+)	partial			WP_011578509.1	restriction endonuclease subunit S	80.4	48.7	43.7
MGA_1054	LOCUS_10510	sequence1:736817..737077(-)	partial			WP_011202294.1	site-specific DNA-methyltransferase	88.4	13.0	48.7
MGA_1058	LOCUS_10550	sequence1:739579..740358(-)	partial			WP_011948591.1	ABC transporter ATP-binding protein/permease	83.4	29.3	34.1
MGA_1062	LOCUS_10590	sequence1:745058..745291(+)	internal_stop_codon	744800..744802(+),745289..745291(+)		WP_011183278.1	aminopeptidase P family protein	92.2	19.9	43.7
MGA_1063	LOCUS_10600	sequence1:745547..745753(+)	internal_stop_codon	745289..745291(+)		WP_011249918.1	Xaa-Pro dipeptidase PepQ	98.5	19.3	58.2
MGA_1069	LOCUS_10660	sequence1:756377..757258(+)	internal_stop_codon	757256..757258(+)		WP_011949183.1	ABC transporter ATP-binding protein	95.9	51.2	28.6
MGA_1071	LOCUS_10680	sequence1:757995..758909(+)	internal_stop_codon	758907..758909(+)		WP_011254198.1	ABC transporter ATP-binding protein	83.6	47.6	30.2
MGA_1077	LOCUS_10730	sequence1:767351..767590(+)	partial			WP_011167107.1	ECF transporter S component	73.4	21.8	40.3
MGA_1081	LOCUS_10770	sequence1:770443..770607(+)	internal_stop_codon	770641..770643(+),770605..770607(+),770419..770421(+),770737..770739(+),770314..770316(+)		WP_002387315.1	valine--tRNA ligase	100.0	6.1	59.3
MGA_1082	LOCUS_10780	sequence1:770791..771327(+)	internal_stop_codon	771451..771453(+),770641..770643(+),770605..770607(+),771430..771432(+),771325..771327(+),771547..771549(+),770737..770739(+),771475..771477(+),771496..771498(+),771577..771579(+)		WP_011183252.1	valine--tRNA ligase	96.1	19.8	49.1
MGA_1083	LOCUS_10790	sequence1:771706..771939(+)	internal_stop_codon	771451..771453(+),771616..771618(+),771937..771939(+),771676..771678(+),771547..771549(+),771694..771696(+),771475..771477(+),771496..771498(+),771958..771960(+),771577..771579(+)		WP_002287953.1	valine--tRNA ligase	100.0	8.7	67.5