{ "type": "genome", "identifier": "GCF_000815105.2", "organism": "Pandoraea pulmonicola", "title": "Pandoraea pulmonicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Malaya", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000815105.2", "bioproject": "PRJNA224116", "biosample": "SAMN03263587", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "93221", "species_taxid": "93221", "organism_name": "Pandoraea pulmonicola", "infraspecific_name": "strain=DSM 16583", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/17", "asm_name": "ASM81510v2", "asm_submitter": "University of Malaya", "gbrs_paired_asm": "GCA_000815105.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/815/105/GCF_000815105.2_ASM81510v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5867621", "genome_size_ungapped": "5867621", "gc_percent": "64.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-04", "total_gene_count": "5097", "protein_coding_gene_count": "4923", "non_coding_gene_count": "90", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-17", "dateModified": "2016-11-17", "datePublished": "2016-11-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Pandoraea pulmonicola" ], "sample_taxid": [ "93221" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "lung infection" ], "sample_host_disease_id": [], "sample_host_location": [ "Canada" ], "sample_host_location_id": [], "data_size": "1.621 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5867621", "Number of Sequences": "1", "Longest Sequences (bp)": "5867621", "N50 (bp)": "5867621", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.3", "Number of CDSs": "5046", "Average Protein Length": "333.4", "Coding Ratio (%)": "86.0", "Number of rRNAs": "12", "Number of tRNAs": "81", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pandoraea pulmonicola", "strain": "strain=DSM 16583", "accession": "GCA_000815105.2", "taxid": 93221, "species_taxid": 93221, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1954, 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78.5179, "matched_fragments": 498, "total_fragments": 1955, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia flava", "strain": "strain=LD6", "accession": "GCA_004359985.1", "taxid": 2547393, "species_taxid": 2547393, "relation_to_type": "type", "validated": true, "ani": 78.4328, "matched_fragments": 542, "total_fragments": 1955, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000815105.2", "gtdb_species": "s__Pandoraea pulmonicola", "ani": 100.0, "matched_fragments": 1955, "total_fragments": 1955, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pandoraea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 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