{
    "type": "genome",
    "identifier": "GCF_000816305.1",
    "organism": "Campylobacter subantarcticus LMG 24377",
    "title": "Campylobacter subantarcticus LMG 24377",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "USDA, ARS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000816305.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03248549",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1388752",
        "species_taxid": "497724",
        "organism_name": "Campylobacter subantarcticus LMG 24377",
        "infraspecific_name": "strain=LMG 24377",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/01/07",
        "asm_name": "ASM81630v1",
        "asm_submitter": "USDA, ARS",
        "gbrs_paired_asm": "GCA_000816305.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/816/305/GCF_000816305.1_ASM81630v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1852995",
        "genome_size_ungapped": "1852995",
        "gc_percent": "30.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-03-03",
        "total_gene_count": "1929",
        "protein_coding_gene_count": "1839",
        "non_coding_gene_count": "58",
        "pubmed_id": "25381664"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-01-07",
    "dateModified": "2015-01-07",
    "datePublished": "2015-01-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Campylobacter subantarcticus LMG 24377"
        ],
        "sample_taxid": [
            "1388752"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Georgia and the South Sandwich Islands"
        ],
        "sample_host_location_id": [],
        "data_size": "0.491 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1852995",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "1852995",
        "N50 (bp)": "1852995",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "29.8",
        "Number of CDSs": "1880",
        "Average Protein Length": "304.8",
        "Coding Ratio (%)": "92.8",
        "Number of rRNAs": "6",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Campylobacter subantarcticus",
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                "accession": "GCA_000816305.1",
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                "species_taxid": 497724,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 614,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Campylobacter lari subsp. concheus",
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                "species_taxid": 201,
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                "ani": 90.071,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Campylobacter lari subsp. concheus",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Campylobacter lari",
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                "species_taxid": 201,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.4015,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Campylobacter lari subsp. lari",
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                "accession": "GCA_013372185.1",
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                "relation_to_type": "type",
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                "ani": 89.3724,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Campylobacter lari subsp. lari",
                "strain": "strain=ATCC 35221",
                "accession": "GCA_900111465.1",
                "taxid": 650054,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 89.3523,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Campylobacter lari",
                "strain": "strain=FDAARGOS_1101",
                "accession": "GCA_016726265.1",
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                "species_taxid": 201,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.2764,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Campylobacter ornithocola",
                "strain": "strain=WBE38",
                "accession": "GCA_001705345.1",
                "taxid": 1848766,
                "species_taxid": 1848766,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Campylobacter ornithocola",
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                "accession": "GCA_013201605.1",
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                "species_taxid": 1848766,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.2986,
                "matched_fragments": 473,
                "total_fragments": 617,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_000816305.1",
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                "total_fragments": 617,
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                "ani_circumscription_radius": 95.0,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D",
                "ani_circumscription_radius": 95.0,
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002179635.1",
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            },
            {
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                "mean_intra_species_ani": "N/A",
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            },
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        ]
    },
    "_bac2feature": {
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        "cell_diameter": -0.396,
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        "rRNA16S_genes": 3.0,
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        "mesophilic_range_tmp": 0.888,
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    },
    "_genome_taxon": [
        "Campylobacter",
        "subantarcticus",
        "LMG",
        "24377"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}