{ "type": "genome", "identifier": "GCF_000819565.1", "organism": "Celeribacter indicus", "title": "Celeribacter indicus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Third Institute of State Oceanic Administration (SOA)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000819565.1", "bioproject": "PRJNA224116", "biosample": "SAMN03280159", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1208324", "species_taxid": "1208324", "organism_name": "Celeribacter indicus", "infraspecific_name": "strain=P73", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/01/16", "asm_name": "ASM81956v1", "asm_submitter": "The Third Institute of State Oceanic Administration (SOA)", "gbrs_paired_asm": "GCA_000819565.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/819/565/GCF_000819565.1_ASM81956v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4969388", "genome_size_ungapped": "4969388", "gc_percent": "65.500000", "replicon_count": "6", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000819565.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4918", "protein_coding_gene_count": "4805", "non_coding_gene_count": "57", "pubmed_id": "25256706;25582347" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-01-16", "dateModified": "2015-01-16", "datePublished": "2015-01-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Celeribacter indicus" ], "sample_taxid": [ "1208324" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.363 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4969388", "Number of Sequences": "6", "Longest Sequences (bp)": "4529105", "N50 (bp)": "4529105", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.7", "Number of CDSs": "4934", "Average Protein Length": "300.7", "Coding Ratio (%)": "89.6", "Number of rRNAs": "6", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Celeribacter indicus", "strain": "strain=P73", "accession": "GCA_000819565.1", "taxid": 1208324, "species_taxid": 1208324, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1638, "total_fragments": 1653, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Celeribacter indicus", "strain": "strain=P73", "accession": "GCA_900106965.1", "taxid": 1208324, "species_taxid": 1208324, "relation_to_type": "type", "validated": true, "ani": 99.9391, "matched_fragments": 1558, "total_fragments": 1653, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Celeribacter persicus", "strain": "strain=DSM 100434", "accession": "GCA_003050785.1", "taxid": 1651082, "species_taxid": 1651082, "relation_to_type": "type", "validated": true, "ani": 81.6024, "matched_fragments": 731, "total_fragments": 1653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter ethanolicus", "strain": "strain=NH195", "accession": "GCA_001550095.1", "taxid": 1758178, "species_taxid": 1758178, "relation_to_type": "type", "validated": true, "ani": 81.185, "matched_fragments": 723, "total_fragments": 1653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter neptunius", "strain": "strain=DSM 26471", "accession": "GCA_900113955.1", "taxid": 588602, "species_taxid": 588602, "relation_to_type": "type", "validated": true, "ani": 80.8254, "matched_fragments": 701, "total_fragments": 1653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter halophilus", "strain": "strain=ZXM137", "accession": "GCA_001550085.1", "taxid": 576117, "species_taxid": 576117, "relation_to_type": "type", "validated": true, "ani": 79.0799, "matched_fragments": 492, "total_fragments": 1653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger pallidus", "strain": "strain=CGMCC 1.15762", "accession": "GCA_014643635.1", "taxid": 1775170, "species_taxid": 1775170, "relation_to_type": "type", "validated": true, "ani": 78.8342, "matched_fragments": 390, "total_fragments": 1653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter sediminicola", "strain": "strain=JA983", "accession": "GCA_007668225.1", "taxid": 2584941, "species_taxid": 2584941, "relation_to_type": "type", "validated": true, "ani": 78.6666, "matched_fragments": 416, "total_fragments": 1653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum tesquicola", "strain": "strain=A-36s", "accession": "GCA_024128855.1", "taxid": 540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 78.5139, "matched_fragments": 439, "total_fragments": 1653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter litoreus", "strain": "strain=ASW11-22", "accession": "GCA_020165855.1", "taxid": 2876714, "species_taxid": 2876714, "relation_to_type": "type", "validated": true, "ani": 78.5128, "matched_fragments": 431, "total_fragments": 1653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibacterium elongatum", "strain": "strain=DFL-43", "accession": "GCA_000590925.1", "taxid": 159346, "species_taxid": 159346, "relation_to_type": "type", "validated": true, "ani": 77.8817, "matched_fragments": 348, "total_fragments": 1653, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000819565.1", "gtdb_species": "s__Celeribacter indicus", "ani": 100.0, "matched_fragments": 1640, "total_fragments": 1653, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Celeribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_003050785.1", "gtdb_species": "s__Celeribacter persicus", "ani": 81.6122, "matched_fragments": 730, "total_fragments": 1653, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Celeribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001550095.1", "gtdb_species": "s__Celeribacter ethanolicus", "ani": 81.1686, "matched_fragments": 723, "total_fragments": 1653, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Celeribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.17", "min_intra_species_ani": "98.15", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900113955.1", "gtdb_species": "s__Celeribacter neptunius", "ani": 80.8103, "matched_fragments": 702, "total_fragments": 1653, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Celeribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011806455.1", "gtdb_species": "s__Celeribacter sp011806455", "ani": 79.7864, "matched_fragments": 575, "total_fragments": 1653, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Celeribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.95", "min_intra_species_ani": "97.95", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900114135.1", "gtdb_species": "s__Celeribacter halophilus", "ani": 78.9912, "matched_fragments": 498, "total_fragments": 1653, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Celeribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.37", "min_intra_species_ani": "95.14", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.87", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_014640115.1", "gtdb_species": "s__Muriiphilus lacisalsi", "ani": 78.5994, "matched_fragments": 443, "total_fragments": 1653, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Muriiphilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004339675.1", "gtdb_species": "s__Rhodovulum steppense", "ani": 78.4557, "matched_fragments": 450, "total_fragments": 1653, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodovulum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003605175.1", "gtdb_species": "s__IMCC34051 sp003605175", "ani": 78.3771, "matched_fragments": 468, "total_fragments": 1653, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__IMCC34051", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.3, "cell_length": 0.075, "doubling_h": null, "growth_tmp": 25.0, "optimum_tmp": 30.0, "optimum_ph": 7.5, "genome_size": 4969388.5, "gc_content": 65.731, "coding_genes": 4736.0, "rRNA16S_genes": 2.0, "tRNA_genes": 47.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.5, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.166, "aerobic_respiration": 0.833, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Celeribacter", "indicus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }