{ "type": "genome", "identifier": "GCF_000819725.1", "organism": "Aeromonas australiensis", "title": "Aeromonas australiensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UCONNMISEQ", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000819725.1", "bioproject": "PRJNA224116", "biosample": "SAMEA2752426", "wgs_master": "CDDH00000000.1", "refseq_category": "reference genome", "taxid": "1114880", "species_taxid": "1114880", "organism_name": "Aeromonas australiensis", "infraspecific_name": "strain=CECT 8023", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/12/01", "asm_name": "PRJEB7021", "asm_submitter": "UCONNMISEQ", "gbrs_paired_asm": "GCA_000819725.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/819/725/GCF_000819725.1_PRJEB7021", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4110035", "genome_size_ungapped": "4110035", "gc_percent": "58.000000", "replicon_count": "0", "scaffold_count": "113", "contig_count": "113", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000819725.1-RS_2024_04_24", "annotation_date": "2024-04-24", "total_gene_count": "3813", "protein_coding_gene_count": "3644", "non_coding_gene_count": "91", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-12-01", "dateModified": "2014-12-01", "datePublished": "2014-12-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Aeromonas australiensis" ], "sample_taxid": [ "1114880" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.163 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4110035", "Number of Sequences": "113", "Longest Sequences (bp)": "262963", "N50 (bp)": "95095", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.1", "Number of CDSs": "3709", "Average Protein Length": "317.2", "Coding Ratio (%)": "85.9", "Number of rRNAs": "4", "Number of tRNAs": "81", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aeromonas australiensis", "strain": "strain=CECT 8023", "accession": "GCA_000819725.1", "taxid": 1114880, "species_taxid": 1114880, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1315, "total_fragments": 1320, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aeromonas veronii", "strain": "strain=CECT 4257", "accession": "GCA_000820225.1", "taxid": 654, "species_taxid": 654, "relation_to_type": "type", "validated": true, "ani": 93.3663, "matched_fragments": 1157, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas veronii", "strain": "strain=ATCC 35624", "accession": "GCA_018359905.1", "taxid": 654, "species_taxid": 654, "relation_to_type": "type", "validated": true, "ani": 93.3596, "matched_fragments": 1162, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas allosaccharophila", "strain": "strain=CECT 4199", "accession": "GCA_000819685.1", "taxid": 656, "species_taxid": 656, "relation_to_type": "type", "validated": true, "ani": 92.2721, "matched_fragments": 1127, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas finlandensis", "strain": "strain=4287D", "accession": "GCA_000764645.1", "taxid": 1543375, "species_taxid": 1543375, "relation_to_type": "type", "validated": true, "ani": 91.6946, "matched_fragments": 1021, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas fluvialis", "strain": "strain=LMG 24681", "accession": "GCA_000819885.1", "taxid": 591962, "species_taxid": 591962, "relation_to_type": "type", "validated": true, "ani": 91.105, "matched_fragments": 1047, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas lacus", "strain": "strain=AE122", "accession": "GCA_000764665.1", "taxid": 558884, "species_taxid": 558884, "relation_to_type": "type", "validated": true, "ani": 89.6866, "matched_fragments": 1062, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas jandaei", "strain": "strain=FDAARGOS_986", "accession": "GCA_016127195.1", "taxid": 650, "species_taxid": 650, "relation_to_type": "type", "validated": true, "ani": 89.6321, "matched_fragments": 1106, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas dhakensis", "strain": "strain=CIP 107500", "accession": "GCA_000820305.1", "taxid": 196024, "species_taxid": 196024, "relation_to_type": "type", "validated": true, "ani": 87.0917, "matched_fragments": 1055, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella jiangmenensis", "strain": "strain=JM162201", "accession": "GCA_018596335.1", "taxid": 2837387, "species_taxid": 2837387, "relation_to_type": "type", "validated": true, "ani": 76.7893, "matched_fragments": 141, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_024169805.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 76.4874, "matched_fragments": 109, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas cavernae", "strain": "strain=K2W31S-8", "accession": "GCA_003595175.1", "taxid": 2320867, "species_taxid": 2320867, "relation_to_type": "type", "validated": true, "ani": 76.4449, "matched_fragments": 107, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_013373935.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 76.3956, "matched_fragments": 116, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=JCM 5962", "accession": "GCA_022496575.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 76.3451, "matched_fragments": 111, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000819725.1", "gtdb_species": "s__Aeromonas australiensis", "ani": 100.0, "matched_fragments": 1315, "total_fragments": 1320, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000820225.1", "gtdb_species": "s__Aeromonas veronii", "ani": 93.3663, "matched_fragments": 1157, "total_fragments": 1320, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.54", "min_intra_species_ani": "96.01", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.86", "num_clustered_genomes": 159, "status": "-" }, { "accession": "GCF_019048265.1", "gtdb_species": "s__Aeromonas veronii_A", "ani": 92.6305, "matched_fragments": 1139, "total_fragments": 1320, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.07", "min_intra_species_ani": "95.82", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000819685.1", "gtdb_species": "s__Aeromonas allosaccharophila", "ani": 92.2803, "matched_fragments": 1126, "total_fragments": 1320, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.32", "min_intra_species_ani": "95.53", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.85", "num_clustered_genomes": 15, "status": "-" }, { "accession": "GCF_000764645.1", "gtdb_species": "s__Aeromonas finlandensis", "ani": 91.722, "matched_fragments": 1018, "total_fragments": 1320, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000819885.1", "gtdb_species": "s__Aeromonas fluvialis", "ani": 91.1036, "matched_fragments": 1048, "total_fragments": 1320, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014204135.1", "gtdb_species": "s__Aeromonas fluvialis_A", "ani": 89.7198, "matched_fragments": 1027, "total_fragments": 1320, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000764665.1", "gtdb_species": "s__Aeromonas lacus", "ani": 89.6864, "matched_fragments": 1062, "total_fragments": 1320, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.8323, "mean_intra_species_ani": "96.97", "min_intra_species_ani": "96.97", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000819955.1", "gtdb_species": "s__Aeromonas jandaei", "ani": 89.5861, "matched_fragments": 1107, "total_fragments": 1320, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.8323, "mean_intra_species_ani": "96.79", "min_intra_species_ani": "96.38", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 26, "status": "-" }, { "accession": "GCF_000820305.1", "gtdb_species": "s__Aeromonas dhakensis", "ani": 87.0768, "matched_fragments": 1057, "total_fragments": 1320, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.35", "min_intra_species_ani": "96.54", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 55, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.071, "cell_length": 0.352, "doubling_h": 0.231, "growth_tmp": 29.0, "optimum_tmp": 29.754, "optimum_ph": 7.945, "genome_size": 4110035.0, "gc_content": 60.359, "coding_genes": 4136.875, "rRNA16S_genes": 9.928, "tRNA_genes": 120.178, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 0.75, "facultative_respiration": 1.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Aeromonas", "australiensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }