{
    "type": "genome",
    "identifier": "GCF_000819955.1",
    "organism": "Aeromonas jandaei",
    "title": "Aeromonas jandaei",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "UCONNMISEQ",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000819955.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA2752417",
        "wgs_master": "CDBV00000000.1",
        "refseq_category": "na",
        "taxid": "650",
        "species_taxid": "650",
        "organism_name": "Aeromonas jandaei",
        "infraspecific_name": "strain=CECT 4228",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/12/01",
        "asm_name": "PRJEB7031",
        "asm_submitter": "UCONNMISEQ",
        "gbrs_paired_asm": "GCA_000819955.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/819/955/GCF_000819955.1_PRJEB7031",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4500350",
        "genome_size_ungapped": "4473473",
        "gc_percent": "59.000000",
        "replicon_count": "0",
        "scaffold_count": "58",
        "contig_count": "58",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000819955.1-RS_2024_04_24",
        "annotation_date": "2024-04-24",
        "total_gene_count": "4281",
        "protein_coding_gene_count": "4123",
        "non_coding_gene_count": "89",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-12-01",
    "dateModified": "2014-12-01",
    "datePublished": "2014-12-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Aeromonas jandaei"
        ],
        "sample_taxid": [
            "650"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.262 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4500350",
        "Number of Sequences": "58",
        "Longest Sequences (bp)": "514888",
        "N50 (bp)": "161393",
        "Gap Ratio (%)": "0.597220",
        "GCcontent (%)": "59.1",
        "Number of CDSs": "4096",
        "Average Protein Length": "314.7",
        "Coding Ratio (%)": "85.9",
        "Number of rRNAs": "2",
        "Number of tRNAs": "85",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Aeromonas jandaei",
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                "accession": "GCA_000819955.1",
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                "species_taxid": 650,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9999,
                "matched_fragments": 1469,
                "total_fragments": 1472,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Aeromonas jandaei",
                "strain": "strain=FDAARGOS_986",
                "accession": "GCA_016127195.1",
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                "species_taxid": 650,
                "relation_to_type": "type",
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                "ani": 99.982,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Aeromonas jandaei",
                "strain": "strain=FDAARGOS_1523",
                "accession": "GCA_020341535.1",
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                "relation_to_type": "type",
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                "ani": 99.9808,
                "matched_fragments": 1470,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
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                "accession": "GCA_000764665.1",
                "taxid": 558884,
                "species_taxid": 558884,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1321,
                "total_fragments": 1472,
                "ani_threshold": 95,
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            },
            {
                "organism_name": "Aeromonas allosaccharophila",
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                "accession": "GCA_000819685.1",
                "taxid": 656,
                "species_taxid": 656,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1179,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aeromonas hydrophila subsp. ranae",
                "strain": "strain=CIP 107985",
                "accession": "GCA_000820325.1",
                "taxid": 208958,
                "species_taxid": 644,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.8899,
                "matched_fragments": 1163,
                "total_fragments": 1472,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aeromonas dhakensis",
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                "accession": "GCA_000820305.1",
                "taxid": 196024,
                "species_taxid": 196024,
                "relation_to_type": "type",
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                "ani": 87.7646,
                "matched_fragments": 1195,
                "total_fragments": 1472,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aeromonas enteropelogenes",
                "strain": "strain=FDAARGOS_1509",
                "accession": "GCA_020097315.1",
                "taxid": 29489,
                "species_taxid": 29489,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.26,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella jiangmenensis",
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                "accession": "GCA_018596335.1",
                "taxid": 2837387,
                "species_taxid": 2837387,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8134,
                "matched_fragments": 134,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas faucium",
                "strain": "strain=BML-PP048",
                "accession": "GCA_021602585.1",
                "taxid": 2740518,
                "species_taxid": 2740518,
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                "validated": true,
                "ani": 76.4206,
                "matched_fragments": 153,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas faucium",
                "strain": "strain=BML-PP048",
                "accession": "GCA_013373935.1",
                "taxid": 2740518,
                "species_taxid": 2740518,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3726,
                "matched_fragments": 147,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas aeruginosa",
                "strain": "strain=DSM 50071",
                "accession": "GCA_024169805.1",
                "taxid": 287,
                "species_taxid": 287,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.367,
                "matched_fragments": 149,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas aeruginosa",
                "strain": "strain=JCM 5962",
                "accession": "GCA_022496575.1",
                "taxid": 287,
                "species_taxid": 287,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3381,
                "matched_fragments": 141,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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                "accession": "GCF_000819955.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas",
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                "accession": "GCF_000820225.1",
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}