{ "type": "genome", "identifier": "GCF_000820005.1", "organism": "Aeromonas piscicola", "title": "Aeromonas piscicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UCONNMISEQ", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000820005.1", "bioproject": "PRJNA224116", "biosample": "SAMEA2752415", "wgs_master": "CDBL00000000.1", "refseq_category": "reference genome", "taxid": "600645", "species_taxid": "600645", "organism_name": "Aeromonas piscicola", "infraspecific_name": "strain=LMG 24783", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/12/01", "asm_name": "PRJEB7033", "asm_submitter": "UCONNMISEQ", "gbrs_paired_asm": "GCA_000820005.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/820/005/GCF_000820005.1_PRJEB7033", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5177970", "genome_size_ungapped": "5155141", "gc_percent": "59.000000", "replicon_count": "0", "scaffold_count": "91", "contig_count": "91", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000820005.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "4969", "protein_coding_gene_count": "4742", "non_coding_gene_count": "94", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-12-01", "dateModified": "2014-12-01", "datePublished": "2014-12-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Aeromonas piscicola" ], "sample_taxid": [ "600645" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.456 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5177970", "Number of Sequences": "91", "Longest Sequences (bp)": "494401", "N50 (bp)": "150424", "Gap Ratio (%)": "0.440887", "GCcontent (%)": "59.2", "Number of CDSs": "4795", "Average Protein Length": "306.4", "Coding Ratio (%)": "85.1", "Number of rRNAs": "3", "Number of tRNAs": "87", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aeromonas piscicola", "strain": "strain=LMG 24783", "accession": "GCA_000820005.1", "taxid": 600645, "species_taxid": 600645, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1677, "total_fragments": 1690, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Aeromonas bestiarum", "strain": "strain=CECT 4227", "accession": "GCA_000819745.1", "taxid": 105751, "species_taxid": 105751, "relation_to_type": "type", "validated": true, "ani": 95.426, "matched_fragments": 1383, "total_fragments": 1690, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Aeromonas popoffii", "strain": "strain=CIP 105493", "accession": "GCA_000820025.1", "taxid": 70856, "species_taxid": 70856, "relation_to_type": "type", "validated": true, "ani": 92.5351, "matched_fragments": 1273, "total_fragments": 1690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas salmonicida subsp. masoucida", "strain": "strain=NBRC 13784", "accession": "GCA_000647955.1", "taxid": 197700, "species_taxid": 645, "relation_to_type": "type", "validated": true, "ani": 92.0992, "matched_fragments": 1227, "total_fragments": 1690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas salmonicida subsp. salmonicida", "strain": "strain=CIP 103209", "accession": "GCA_000820065.1", "taxid": 29491, "species_taxid": 645, "relation_to_type": "type", "validated": true, "ani": 91.9313, "matched_fragments": 1314, "total_fragments": 1690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas salmonicida", "strain": "strain=NCTC12959", "accession": "GCA_900445115.1", "taxid": 645, "species_taxid": 645, "relation_to_type": "type", "validated": true, "ani": 91.88, "matched_fragments": 1350, "total_fragments": 1690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas salmonicida subsp. salmonicida", "strain": "strain=ATCC 33658", "accession": "GCA_001643305.1", "taxid": 29491, "species_taxid": 645, "relation_to_type": "type", "validated": true, "ani": 91.875, "matched_fragments": 1313, "total_fragments": 1690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas salmonicida subsp. pectinolytica", "strain": "strain=34mel", "accession": "GCA_000447435.2", "taxid": 96473, "species_taxid": 645, "relation_to_type": "type", "validated": true, "ani": 91.7187, "matched_fragments": 1258, "total_fragments": 1690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas salmonicida subsp. pectinolytica", "strain": "strain=34mel", "accession": "GCA_002735225.1", "taxid": 96473, "species_taxid": 645, "relation_to_type": "type", "validated": true, "ani": 91.6598, "matched_fragments": 1324, "total_fragments": 1690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leminorella grimontii", "strain": "strain=JCM 5902", "accession": "GCA_024343555.1", "taxid": 82981, "species_taxid": 82981, "relation_to_type": "type", "validated": true, "ani": 76.9902, "matched_fragments": 90, "total_fragments": 1690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_013373935.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 76.3357, "matched_fragments": 151, "total_fragments": 1690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_021602585.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 76.3152, "matched_fragments": 154, "total_fragments": 1690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=JCM 5962", "accession": "GCA_022496575.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 76.2887, "matched_fragments": 150, "total_fragments": 1690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_024169805.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 76.2677, "matched_fragments": 163, "total_fragments": 1690, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000820005.1", "gtdb_species": "s__Aeromonas piscicola", "ani": 100.0, "matched_fragments": 1677, "total_fragments": 1690, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.5033, "mean_intra_species_ani": "97.81", "min_intra_species_ani": "97.81", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_000819745.1", "gtdb_species": "s__Aeromonas bestiarum", "ani": 95.426, "matched_fragments": 1383, "total_fragments": 1690, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.5033, "mean_intra_species_ani": "97.44", "min_intra_species_ani": "97.31", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000820025.1", "gtdb_species": "s__Aeromonas popoffii", "ani": 92.5351, "matched_fragments": 1273, "total_fragments": 1690, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.17", "min_intra_species_ani": "98.00", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001643305.1", "gtdb_species": "s__Aeromonas salmonicida", "ani": 91.895, "matched_fragments": 1312, "total_fragments": 1690, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.08", "min_intra_species_ani": "96.89", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.86", "num_clustered_genomes": 74, "status": "-" }, { "accession": "GCF_000014805.1", "gtdb_species": "s__Aeromonas hydrophila", "ani": 89.7122, "matched_fragments": 1352, "total_fragments": 1690, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.01", "min_intra_species_ani": "96.24", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 120, "status": "-" }, { "accession": "GCF_900637545.1", "gtdb_species": "s__Aeromonas encheleia", "ani": 88.2615, "matched_fragments": 1246, "total_fragments": 1690, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.38", "min_intra_species_ani": "97.80", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_000820045.1", "gtdb_species": "s__Aeromonas rivuli", "ani": 84.5103, "matched_fragments": 1049, "total_fragments": 1690, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000388115.1", "gtdb_species": "s__Aeromonas molluscorum", "ani": 84.3262, "matched_fragments": 949, "total_fragments": 1690, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.127, "cell_length": 0.301, "doubling_h": 0.231, "growth_tmp": 29.0, "optimum_tmp": 29.754, "optimum_ph": 7.945, "genome_size": 5163139.0, "gc_content": 60.359, "coding_genes": 4136.875, "rRNA16S_genes": 9.928, "tRNA_genes": 120.178, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.937, "range_salinity": 0.75, "facultative_respiration": 0.346, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.653, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Aeromonas", "piscicola" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }