{
    "type": "genome",
    "identifier": "GCF_000820845.2",
    "organism": "Pyrinomonas methylaliphatogenes",
    "title": "Pyrinomonas methylaliphatogenes",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "GNS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000820845.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA3158464",
        "wgs_master": "CBXV000000000.1",
        "refseq_category": "reference genome",
        "taxid": "454194",
        "species_taxid": "454194",
        "organism_name": "Pyrinomonas methylaliphatogenes",
        "infraspecific_name": "strain=K22",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Minor",
        "genome_rep": "Full",
        "seq_rel_date": "2015/01/13",
        "asm_name": "K22",
        "asm_submitter": "GNS",
        "gbrs_paired_asm": "GCA_000820845.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/820/845/GCF_000820845.2_K22",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3788560",
        "genome_size_ungapped": "3788560",
        "gc_percent": "59.500000",
        "replicon_count": "0",
        "scaffold_count": "16",
        "contig_count": "16",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000820845.2-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "3184",
        "protein_coding_gene_count": "3106",
        "non_coding_gene_count": "53",
        "pubmed_id": "24048862"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-01-13",
    "dateModified": "2015-01-13",
    "datePublished": "2015-01-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pyrinomonas methylaliphatogenes"
        ],
        "sample_taxid": [
            "454194"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.057 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3788560",
        "Number of Sequences": "16",
        "Longest Sequences (bp)": "1063214",
        "N50 (bp)": "443598",
        "Gap Ratio (%)": "0.000026",
        "GCcontent (%)": "59.4",
        "Number of CDSs": "3154",
        "Average Protein Length": "349.1",
        "Coding Ratio (%)": "87.2",
        "Number of rRNAs": "3",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "11"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Pyrinomonas methylaliphatogenes",
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                "accession": "GCA_000820845.2",
                "taxid": 454194,
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1254,
                "total_fragments": 1256,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Labilithrix luteola",
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                "accession": "GCA_001263205.1",
                "taxid": 1391654,
                "species_taxid": 1391654,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 59,
                "total_fragments": 1256,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_000820845.2",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_019242475.1",
                "gtdb_species": "s__QHXN01 sp019242475",
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                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__QHXN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019247865.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__JACMLC01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013696465.1",
                "gtdb_species": "s__JACCYN01 sp013696465",
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                "total_fragments": 1256,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__JACCYN01",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003223935.1",
                "gtdb_species": "s__QHXQ01 sp003223935",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016700195.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013813825.1",
                "gtdb_species": "s__JACCRA01 sp013813825",
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                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__JACCRA01",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_014379795.1",
                "gtdb_species": "s__JACMLC01 sp014379795",
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                "matched_fragments": 59,
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                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__JACMLC01",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_016709545.1",
                "gtdb_species": "s__JADJMO01 sp016709545",
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                "matched_fragments": 65,
                "total_fragments": 1256,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__JADJMO01;g__JADJMO01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.09",
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                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.523,
        "cell_length": 0.0,
        "doubling_h": null,
        "growth_tmp": 60.0,
        "optimum_tmp": 65.0,
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        "genome_size": 3795097.0,
        "gc_content": null,
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        "rRNA16S_genes": null,
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        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
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        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
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    "_genome_taxon": [
        "Pyrinomonas",
        "methylaliphatogenes"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}