{ "type": "genome", "identifier": "GCF_000821185.2", "organism": "Serratia symbiotica", "title": "Serratia symbiotica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "universit\u00e9 catholique de louvain", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000821185.2", "bioproject": "PRJNA224116", "biosample": "SAMEA2581874", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "138074", "species_taxid": "138074", "organism_name": "Serratia symbiotica", "infraspecific_name": "strain=CWBI-2.3", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/14", "asm_name": "ASM82118v2", "asm_submitter": "universit\u00e9 catholique de louvain", "gbrs_paired_asm": "GCA_000821185.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/821/185/GCF_000821185.2_ASM82118v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3550913", "genome_size_ungapped": "3550913", "gc_percent": "52.000000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000821185.2-RS_2024_03_15", "annotation_date": "2024-03-15", "total_gene_count": "3505", "protein_coding_gene_count": "3004", "non_coding_gene_count": "96", "pubmed_id": "25146134" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-14", "dateModified": "2020-07-14", "datePublished": "2020-07-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Serratia symbiotica" ], "sample_taxid": [ "138074" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.003 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3550913", "Number of Sequences": "3", "Longest Sequences (bp)": "3351526", "N50 (bp)": "3351526", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.0", "Number of CDSs": "3480", "Average Protein Length": "276.2", "Coding Ratio (%)": "81.2", "Number of rRNAs": "22", "Number of tRNAs": "70", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Serratia symbiotica", "strain": "strain=CWBI-2.3", "accession": "GCA_000821185.2", "taxid": 138074, "species_taxid": 138074, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 1176, "total_fragments": 1182, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Serratia ficaria", "strain": "strain=NCTC12148", "accession": "GCA_900187015.1", "taxid": 61651, "species_taxid": 61651, "relation_to_type": "type", "validated": true, "ani": 83.3819, "matched_fragments": 677, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia entomophila", "strain": "strain=A1", "accession": "GCA_021462285.1", "taxid": 42906, "species_taxid": 42906, "relation_to_type": "type", "validated": true, "ani": 83.3522, "matched_fragments": 671, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia ficaria", "strain": "strain=NBRC 102596", "accession": "GCA_001590885.1", "taxid": 61651, "species_taxid": 61651, "relation_to_type": "type", "validated": true, "ani": 83.1397, "matched_fragments": 667, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia nematodiphila", "strain": "strain=DSM 21420", "accession": "GCA_000738675.1", "taxid": 458197, "species_taxid": 458197, "relation_to_type": "suspected-type", "validated": true, "ani": 82.2855, "matched_fragments": 623, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia marcescens", "strain": "strain=ATCC 13880", "accession": "GCA_017654245.1", "taxid": 615, "species_taxid": 615, "relation_to_type": "suspected-type", "validated": true, "ani": 82.1872, "matched_fragments": 624, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia plymuthica", "strain": "strain=FDAARGOS_895", "accession": "GCA_016027675.1", "taxid": 82996, "species_taxid": 82996, "relation_to_type": "type", "validated": true, "ani": 82.155, "matched_fragments": 617, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia inhibens", "strain": "strain=S40", "accession": "GCA_003591175.1", "taxid": 2338073, "species_taxid": 2338073, "relation_to_type": "type", "validated": true, "ani": 81.8493, "matched_fragments": 600, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia plymuthica", "strain": "strain=NBRC 102599", "accession": "GCA_001590925.1", "taxid": 82996, "species_taxid": 82996, "relation_to_type": "type", "validated": true, "ani": 81.8432, "matched_fragments": 595, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia bockelmannii", "strain": "strain=S3", "accession": "GCA_008011855.1", "taxid": 2703793, "species_taxid": 2703793, "relation_to_type": "type", "validated": true, "ani": 81.8393, "matched_fragments": 590, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia nevei", "strain": "strain=S15", "accession": "GCA_008364245.1", "taxid": 2703794, 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