{ "type": "genome", "identifier": "GCF_000821325.1", "organism": "Planococcus massiliensis", "title": "Planococcus massiliensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000821325.1", "bioproject": "PRJNA224116", "biosample": "SAMEA2784220", "wgs_master": "CCXS00000000.1", "refseq_category": "reference genome", "taxid": "1499687", "species_taxid": "1499687", "organism_name": "Planococcus massiliensis", "infraspecific_name": "strain=ES2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/10/09", "asm_name": "PRJEB6479_assembly_1", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_000821325.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/821/325/GCF_000821325.1_PRJEB6479_assembly_1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3357017", "genome_size_ungapped": "3357017", "gc_percent": "46.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000821325.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3423", "protein_coding_gene_count": "3326", "non_coding_gene_count": "78", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-10-09", "dateModified": "2014-10-09", "datePublished": "2014-10-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Planococcus massiliensis" ], "sample_taxid": [ "1499687" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.948 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3357017", "Number of Sequences": "1", "Longest Sequences (bp)": "3357017", "N50 (bp)": "3357017", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.0", "Number of CDSs": "3357", "Average Protein Length": "294.9", "Coding Ratio (%)": "88.5", "Number of rRNAs": "13", "Number of tRNAs": "64", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Planococcus massiliensis", "strain": "strain=ES2", "accession": "GCA_000821325.2", "taxid": 1499687, "species_taxid": 1499687, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1119, "total_fragments": 1119, "ani_threshold": 95, 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"GCA_900445365.1", "taxid": 1399, "species_taxid": 1399, "relation_to_type": "suspected-type", "validated": true, "ani": 78.716, "matched_fragments": 54, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus citreus", "strain": "strain=DSM 20549", "accession": "GCA_003664125.1", "taxid": 1373, "species_taxid": 1373, "relation_to_type": "type", "validated": true, "ani": 78.6627, "matched_fragments": 323, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus citreus", "strain": "strain=DSM 20549", "accession": "GCA_004761885.1", "taxid": 1373, "species_taxid": 1373, "relation_to_type": "type", "validated": true, "ani": 78.5347, "matched_fragments": 303, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000821325.1", 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