{ "type": "genome", "identifier": "GCF_000826185.2", "organism": "Microbacterium gorillae", "title": "Microbacterium gorillae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000826185.2", "bioproject": "PRJNA224116", "biosample": "SAMEA2826820", "wgs_master": "CDAR00000000.1", "refseq_category": "reference genome", "taxid": "1231063", "species_taxid": "1231063", "organism_name": "Microbacterium gorillae", "infraspecific_name": "strain=G3", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/11/04", "asm_name": "Microbacterium massiliensis G3", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_000826185.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/826/185/GCF_000826185.2_Microbacterium_massiliensis_G3", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3692944", "genome_size_ungapped": "3692770", "gc_percent": "69.500000", "replicon_count": "0", "scaffold_count": "12", "contig_count": "14", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000826185.2-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3554", "protein_coding_gene_count": "3461", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-11-04", "dateModified": "2014-11-04", "datePublished": "2014-11-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Microbacterium gorillae" ], "sample_taxid": [ "1231063" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.995 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3692944", "Number of Sequences": "12", "Longest Sequences (bp)": "1728296", "N50 (bp)": "759160", "Gap Ratio (%)": "0.004820", "GCcontent (%)": "69.3", "Number of CDSs": "3518", "Average Protein Length": "320.3", "Coding Ratio (%)": "91.5", "Number of rRNAs": "10", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Microbacterium gorillae", "strain": "strain=G3", "accession": "GCA_000826185.2", "taxid": 1231063, "species_taxid": 1231063, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1220, "total_fragments": 1224, "ani_threshold": 95, 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79.2666, "matched_fragments": 388, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium enclense", "strain": "strain=NIO-1002", "accession": "GCA_900096885.1", "taxid": 993073, "species_taxid": 993073, "relation_to_type": "type", "validated": true, "ani": 79.2632, "matched_fragments": 375, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium helvum", "strain": "strain=NEAU-LLC", "accession": "GCA_014779795.1", "taxid": 2773713, "species_taxid": 2773713, "relation_to_type": "type", "validated": true, "ani": 79.2223, "matched_fragments": 449, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium resistens", "strain": "strain=NBRC 103078", "accession": "GCA_001552355.1", "taxid": 156977, "species_taxid": 156977, "relation_to_type": "type", "validated": true, "ani": 79.1744, "matched_fragments": 409, 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79.6953, "matched_fragments": 373, "total_fragments": 1224, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014208045.1", "gtdb_species": "s__Microbacterium thalassium", "ani": 79.693, "matched_fragments": 407, "total_fragments": 1224, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_902506375.1", "gtdb_species": "s__Microbacterium sp902506375", "ani": 79.6849, "matched_fragments": 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