{ "type": "genome", "identifier": "GCF_000826205.1", "organism": "Citrobacter pasteurii", "title": "Citrobacter pasteurii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "INSTITUT PASTEUR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000826205.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3099656", "wgs_master": "CDHL00000000.1", "refseq_category": "na", "taxid": "1563222", "species_taxid": "1563222", "organism_name": "Citrobacter pasteurii", "infraspecific_name": "strain=CIP 55.13", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/12/04", "asm_name": "Citrobacter_pasteurii_55-13", "asm_submitter": "INSTITUT PASTEUR", "gbrs_paired_asm": "GCA_000826205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/826/205/GCF_000826205.1_Citrobacter_pasteurii_55-13", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4986623", "genome_size_ungapped": "4986623", "gc_percent": "52.000000", "replicon_count": "0", "scaffold_count": "56", "contig_count": "56", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000826205.1-RS_2024_04_29", "annotation_date": "2024-04-29", "total_gene_count": "4879", "protein_coding_gene_count": "4672", "non_coding_gene_count": "85", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-12-04", "dateModified": "2014-12-04", "datePublished": "2014-12-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Citrobacter pasteurii" ], "sample_taxid": [ "1563222" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.422 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4986623", "Number of Sequences": "56", "Longest Sequences (bp)": "505367", "N50 (bp)": "292028", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "51.8", "Number of CDSs": "4702", "Average Protein Length": "310.5", "Coding Ratio (%)": "87.8", "Number of rRNAs": "4", "Number of tRNAs": "72", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Citrobacter pasteurii", "strain": "strain=CIP 55.13", "accession": "GCA_000826205.1", "taxid": 1563222, "species_taxid": 1563222, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1633, "total_fragments": 1636, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Citrobacter pasteurii", "strain": "strain=FDAARGOS 1424", "accession": "GCA_019047765.1", "taxid": 1563222, "species_taxid": 1563222, "relation_to_type": "type", "validated": true, "ani": 99.9974, "matched_fragments": 1629, "total_fragments": 1636, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Citrobacter youngae", "strain": "strain=CCUG 30791", "accession": "GCA_003818115.1", "taxid": 133448, "species_taxid": 133448, "relation_to_type": "type", "validated": true, "ani": 95.4023, "matched_fragments": 1391, "total_fragments": 1636, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Citrobacter youngae", "strain": "strain=NCTC13709", "accession": "GCA_900638065.1", "taxid": 133448, "species_taxid": 133448, "relation_to_type": "type", "validated": true, "ani": 95.3809, "matched_fragments": 1415, "total_fragments": 1636, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Citrobacter 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"GCA_004353845.1", "taxid": 2546350, "species_taxid": 2546350, "relation_to_type": "type", "validated": true, "ani": 89.8705, "matched_fragments": 1310, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salmonella enterica subsp. enterica", "strain": "strain=PartC-Senterica-RM8376", "accession": "GCA_022869965.1", "taxid": 59201, "species_taxid": 28901, "relation_to_type": "suspected-type", "validated": true, "ani": 82.7834, "matched_fragments": 967, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter rodentium", "strain": "strain=DSM 16636", "accession": "GCA_021278985.1", "taxid": 67825, "species_taxid": 67825, "relation_to_type": "type", "validated": true, "ani": 82.6176, "matched_fragments": 1004, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Escherichia coli", "strain": "strain=DSM 30083", "accession": "GCA_024519395.1", 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