{ "tc_result": [ { "organism_name": "Actinobacillus seminis", "strain": "strain=ATCC 15768", "accession": "GCA_002263215.1", "taxid": 722, "species_taxid": 722, "relation_to_type": "type", "validated": true, "ani": 78.3274, "matched_fragments": 222, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinobacillus seminis", "strain": "strain=NCTC10851", "accession": "GCA_900460625.1", "taxid": 722, "species_taxid": 722, "relation_to_type": "type", "validated": true, "ani": 78.3045, "matched_fragments": 224, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vespertiliibacter pulmonis", "strain": "strain=CCUG 64585", "accession": "GCA_013377275.1", "taxid": 1443036, "species_taxid": 1443036, "relation_to_type": "type", "validated": true, "ani": 78.2384, "matched_fragments": 57, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Avibacterium volantium", "strain": "strain=NCTC3438", "accession": "GCA_900635775.1", "taxid": 762, "species_taxid": 762, "relation_to_type": "type", "validated": true, "ani": 78.1912, "matched_fragments": 215, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vespertiliibacter pulmonis", "strain": "strain=DSM 27238", "accession": "GCA_003843855.1", "taxid": 1443036, "species_taxid": 1443036, "relation_to_type": "type", "validated": true, "ani": 78.0849, "matched_fragments": 56, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Avibacterium gallinarum", "strain": "strain=DSM 17481", "accession": "GCA_004362535.1", "taxid": 755, "species_taxid": 755, "relation_to_type": "type", "validated": true, "ani": 78.0048, "matched_fragments": 213, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinobacillus porcinus", "strain": "strain=NM319", "accession": "GCA_900773985.1", "taxid": 51048, "species_taxid": 51048, "relation_to_type": "type", "validated": true, "ani": 77.9454, "matched_fragments": 143, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Avibacterium gallinarum", "strain": "strain=NCTC11188", "accession": "GCA_900454485.1", "taxid": 755, "species_taxid": 755, "relation_to_type": "type", "validated": true, "ani": 77.9426, "matched_fragments": 218, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinobacillus porcinus", "strain": "strain=NM319", "accession": "GCA_901764995.1", "taxid": 51048, "species_taxid": 51048, "relation_to_type": "type", "validated": true, "ani": 77.9214, "matched_fragments": 144, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Avibacterium endocarditidis", "strain": "strain=20186H4H1", "accession": "GCA_002921145.1", "taxid": 380674, "species_taxid": 380674, "relation_to_type": "type", "validated": true, "ani": 77.9049, "matched_fragments": 198, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Avibacterium avium", "strain": "strain=NCTC 11297", "accession": "GCA_900454535.1", "taxid": 751, "species_taxid": 751, "relation_to_type": "type", "validated": true, "ani": 77.8954, "matched_fragments": 224, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinobacillus equuli", "strain": "strain=NCTC8529", "accession": "GCA_900636745.1", "taxid": 718, "species_taxid": 718, "relation_to_type": "type", "validated": true, "ani": 77.8562, "matched_fragments": 87, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Avibacterium gallinarum", "strain": "strain=NCTC 11188", "accession": "GCA_002921135.1", "taxid": 755, "species_taxid": 755, "relation_to_type": "type", "validated": true, "ani": 77.8045, "matched_fragments": 214, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aggregatibacter segnis", "strain": "strain=ATCC 33393", "accession": "GCA_000185305.1", "taxid": 739, "species_taxid": 739, "relation_to_type": "type", "validated": true, "ani": 77.6943, "matched_fragments": 178, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aggregatibacter segnis", "strain": "strain=FDAARGOS_987", "accession": "GCA_016127115.1", "taxid": 739, "species_taxid": 739, "relation_to_type": "type", "validated": true, "ani": 77.6905, "matched_fragments": 184, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aggregatibacter segnis", "strain": "strain=NCTC10977", "accession": "GCA_900476035.1", "taxid": 739, "species_taxid": 739, "relation_to_type": "type", "validated": true, "ani": 77.6761, "matched_fragments": 181, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rodentibacter pneumotropicus", "strain": "strain=ATCC 35149", "accession": "GCA_000730685.1", "taxid": 758, "species_taxid": 758, "relation_to_type": "type", "validated": true, "ani": 77.6059, "matched_fragments": 137, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glaesserella parasuis", "strain": "strain=CCUG 3712", "accession": "GCA_002015085.1", "taxid": 738, "species_taxid": 738, "relation_to_type": "type", "validated": true, "ani": 77.5145, "matched_fragments": 88, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aggregatibacter kilianii", "strain": "strain=PN_528", "accession": "GCA_003130255.1", "taxid": 2025884, "species_taxid": 2025884, "relation_to_type": "type", "validated": true, "ani": 77.451, "matched_fragments": 219, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pasteurella testudinis", "strain": "strain=NCTC12150", "accession": "GCA_900454705.1", "taxid": 761, "species_taxid": 761, "relation_to_type": "type", "validated": true, "ani": 77.4466, "matched_fragments": 187, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rodentibacter rarus", "strain": "strain=CCUG 17206", "accession": "GCA_001998965.1", "taxid": 1908260, "species_taxid": 1908260, "relation_to_type": "type", "validated": true, "ani": 77.4362, "matched_fragments": 151, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glaesserella parasuis", "strain": "strain=NCTC4557", "accession": "GCA_900450925.1", "taxid": 738, "species_taxid": 738, "relation_to_type": "type", "validated": true, "ani": 77.4189, "matched_fragments": 92, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rodentibacter pneumotropicus", "strain": "strain=DSM 21403", "accession": "GCA_000379905.1", "taxid": 758, "species_taxid": 758, "relation_to_type": "type", "validated": true, "ani": 77.4069, "matched_fragments": 133, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rodentibacter heidelbergensis", "strain": "strain=Ac69", "accession": "GCA_002000125.1", "taxid": 1908258, "species_taxid": 1908258, "relation_to_type": "type", "validated": true, "ani": 77.3512, "matched_fragments": 149, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pasteurella testudinis", "strain": "strain=DSM 23072", "accession": "GCA_019633665.1", "taxid": 761, "species_taxid": 761, "relation_to_type": "type", "validated": true, "ani": 77.1866, "matched_fragments": 184, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pasteurella testudinis", "strain": "strain=DSM 23072", "accession": "GCA_900176075.1", "taxid": 761, "species_taxid": 761, "relation_to_type": "type", "validated": true, "ani": 77.1592, "matched_fragments": 186, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirabiliibacterium mucosae", "strain": "strain=20609_3", "accession": "GCA_014884965.1", "taxid": 28156, "species_taxid": 28156, "relation_to_type": "type", "validated": true, "ani": 76.9444, "matched_fragments": 79, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000827595.2", "gtdb_species": "s__Necropsobacter massiliensis", "ani": 100.0, "matched_fragments": 814, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Necropsobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_000752995.2", "gtdb_species": "s__Necropsobacter massiliensis_B", "ani": 93.5651, "matched_fragments": 707, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Necropsobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_000751835.1", "gtdb_species": "s__Necropsobacter rosorum", "ani": 84.7736, "matched_fragments": 637, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Necropsobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018381425.1", "gtdb_species": "s__Haemophilus_D parainfluenzae_O", "ani": 81.8798, "matched_fragments": 77, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.89", "min_intra_species_ani": "95.76", "mean_intra_species_af": "0.75", "min_intra_species_af": "0.73", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000210895.1", "gtdb_species": "s__Haemophilus_D parainfluenzae_A", "ani": 80.7457, "matched_fragments": 127, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.08", "min_intra_species_ani": "95.08", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002795405.1", "gtdb_species": "s__Caviibacterium pharyngocola", "ani": 79.1469, "matched_fragments": 380, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Caviibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002263215.1", "gtdb_species": "s__Actinobacillus_B seminis", "ani": 78.3271, "matched_fragments": 222, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Actinobacillus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.95", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900635775.1", "gtdb_species": "s__Avibacterium volantium", "ani": 78.1969, "matched_fragments": 214, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Avibacterium", "ani_circumscription_radius": 95.623, "mean_intra_species_ani": "96.13", "min_intra_species_ani": "96.13", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900637275.1", "gtdb_species": "s__Actinobacillus_B aerogenes", "ani": 78.1582, "matched_fragments": 245, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Actinobacillus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003129965.1", "gtdb_species": "s__Aggregatibacter kilianii_A", "ani": 77.9271, "matched_fragments": 248, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002921145.1", "gtdb_species": "s__Avibacterium endocarditidis", "ani": 77.9049, "matched_fragments": 198, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Avibacterium", "ani_circumscription_radius": 95.5151, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000017245.1", "gtdb_species": "s__Basfia_A succinogenes", "ani": 77.7384, "matched_fragments": 196, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Basfia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001998825.1", "gtdb_species": "s__Rodentibacter mrazii", "ani": 77.708, "matched_fragments": 160, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Rodentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.11", "min_intra_species_ani": "95.11", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004363295.1", "gtdb_species": "s__Mesocricetibacter intestinalis", "ani": 77.6455, "matched_fragments": 219, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Mesocricetibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905373425.1", "gtdb_species": "s__Mesocricetibacter sp905373425", "ani": 77.603, "matched_fragments": 137, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Mesocricetibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_901420285.1", "gtdb_species": "s__Rodentibacter sp901420285", "ani": 77.559, "matched_fragments": 158, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Rodentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900176075.1", "gtdb_species": "s__Chelonobacter testudinis", "ani": 77.1703, "matched_fragments": 185, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Chelonobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }