{ "type": "genome", "identifier": "GCF_000829435.1", "organism": "Jeotgalibacillus soli", "title": "Jeotgalibacillus soli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Universiti Teknologi Malaysia", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000829435.1", "bioproject": "PRJNA224116", "biosample": "SAMN03005144", "wgs_master": "JXRP00000000.1", "refseq_category": "reference genome", "taxid": "889306", "species_taxid": "889306", "organism_name": "Jeotgalibacillus soli", "infraspecific_name": "strain=P9", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/01/27", "asm_name": "ASM82943v1", "asm_submitter": "Universiti Teknologi Malaysia", "gbrs_paired_asm": "GCA_000829435.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/829/435/GCF_000829435.1_ASM82943v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3776953", "genome_size_ungapped": "3776953", "gc_percent": "39.500000", "replicon_count": "0", "scaffold_count": "24", "contig_count": "24", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000829435.1-RS_2024_04_07", "annotation_date": "2024-04-07", "total_gene_count": "3858", "protein_coding_gene_count": "3645", "non_coding_gene_count": "89", "pubmed_id": "25999554" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-01-27", "dateModified": "2015-01-27", "datePublished": "2015-01-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Jeotgalibacillus soli" ], "sample_taxid": [ "889306" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.074 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3776953", "Number of Sequences": "24", "Longest Sequences (bp)": "892462", "N50 (bp)": "525494", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.7", "Number of CDSs": "3797", "Average Protein Length": "273.7", "Coding Ratio (%)": "82.5", "Number of rRNAs": "2", "Number of tRNAs": "77", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Jeotgalibacillus soli", "strain": "strain=P9", "accession": "GCA_000829435.1", "taxid": 889306, "species_taxid": 889306, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1248, "total_fragments": 1249, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Jeotgalibacillus campisalis", "strain": "strain=SF-57", "accession": "GCA_000829515.1", "taxid": 220754, "species_taxid": 220754, "relation_to_type": "type", "validated": true, "ani": 77.9558, "matched_fragments": 204, "total_fragments": 1249, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jeotgalibacillus alimentarius", "strain": "strain=YKJ-13", "accession": "GCA_000829445.1", "taxid": 135826, "species_taxid": 135826, "relation_to_type": "type", "validated": true, "ani": 77.5711, "matched_fragments": 122, "total_fragments": 1249, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus idriensis", "strain": "strain=DSM-19097", "accession": "GCA_904423875.1", "taxid": 324768, "species_taxid": 324768, "relation_to_type": "type", "validated": true, "ani": 77.5507, "matched_fragments": 78, "total_fragments": 1249, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jeotgalibacillus salarius", "strain": "strain=ASL-1", "accession": "GCA_004405125.1", "taxid": 546023, "species_taxid": 546023, "relation_to_type": "type", "validated": true, "ani": 77.4115, "matched_fragments": 118, "total_fragments": 1249, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jeotgalibacillus terrae", "strain": "strain=DSM 22174", "accession": "GCA_016908195.1", "taxid": 587735, "species_taxid": 587735, "relation_to_type": "type", "validated": true, "ani": 77.4005, "matched_fragments": 132, "total_fragments": 1249, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus idriensis", "strain": "strain=DSM 19097", "accession": "GCA_009674765.1", "taxid": 324768, "species_taxid": 324768, "relation_to_type": "type", "validated": true, "ani": 77.3955, "matched_fragments": 74, "total_fragments": 1249, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus kokaensis", "strain": "strain=LOB 377", "accession": "GCA_014656545.1", "taxid": 2759023, "species_taxid": 2759023, "relation_to_type": "type", "validated": true, "ani": 77.0593, "matched_fragments": 51, "total_fragments": 1249, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus coahuilensis", "strain": "strain=m4-4", "accession": "GCA_000171615.1", "taxid": 408580, "species_taxid": 408580, "relation_to_type": "type", "validated": true, "ani": 76.9995, "matched_fragments": 74, "total_fragments": 1249, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus sediminilitoris", "strain": "strain=DSL-17", "accession": "GCA_009720625.1", "taxid": 2567941, "species_taxid": 2567941, "relation_to_type": "type", "validated": true, "ani": 76.9235, "matched_fragments": 66, "total_fragments": 1249, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niallia nealsonii", "strain": "strain=FO-92", "accession": "GCA_002835805.1", "taxid": 115979, "species_taxid": 115979, "relation_to_type": "type", "validated": true, "ani": 76.8713, "matched_fragments": 75, "total_fragments": 1249, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus jeddahensis", "strain": "strain=JCE", "accession": "GCA_000612625.1", "taxid": 1461580, "species_taxid": 1461580, "relation_to_type": "type", "validated": true, "ani": 76.8576, "matched_fragments": 52, "total_fragments": 1249, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus dakarensis", "strain": "strain=Marseille-P3515", "accession": "GCA_900156875.1", "taxid": 1926278, "species_taxid": 1926278, "relation_to_type": "type", "validated": true, "ani": 76.5982, "matched_fragments": 66, "total_fragments": 1249, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus bambusae", "strain": "strain=BG109", "accession": "GCA_017497975.1", "taxid": 2795218, "species_taxid": 2795218, "relation_to_type": "type", "validated": true, "ani": 76.5947, "matched_fragments": 94, "total_fragments": 1249, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Heyndrickxia sporothermodurans", "strain": "strain=DSM 10599", "accession": "GCA_016785185.1", "taxid": 46224, "species_taxid": 46224, "relation_to_type": "type", "validated": true, "ani": 76.5252, "matched_fragments": 64, "total_fragments": 1249, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litchfieldia alkalitelluris", "strain": "strain=DSM 16976", "accession": "GCA_002019645.1", "taxid": 304268, "species_taxid": 304268, "relation_to_type": "type", "validated": true, "ani": 76.3682, "matched_fragments": 67, "total_fragments": 1249, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus sediminilitoris", "strain": "strain=DSL-17", "accession": "GCA_004801455.1", "taxid": 2567941, "species_taxid": 2567941, "relation_to_type": "type", "validated": true, "ani": 76.3368, "matched_fragments": 61, "total_fragments": 1249, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus kexueae", "strain": "strain=KCTC 33881", "accession": "GCA_022809095.1", "taxid": 2078952, "species_taxid": 2078952, "relation_to_type": "type", "validated": true, "ani": 76.1713, "matched_fragments": 60, "total_fragments": 1249, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lederbergia wuyishanensis", "strain": "strain=CGMCC 1.12709", "accession": "GCA_022900255.1", "taxid": 1347903, "species_taxid": 1347903, "relation_to_type": "type", "validated": true, "ani": 76.0311, "matched_fragments": 51, "total_fragments": 1249, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000829435.1", "gtdb_species": "s__Jeotgalibacillus soli", "ani": 100.0, "matched_fragments": 1248, "total_fragments": 1249, "gtdb_taxonomy": 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sp017497975", "ani": 76.5928, "matched_fragments": 93, "total_fragments": 1249, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Metabacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017355915.1", "gtdb_species": "s__Mesobacillus sp017355915", "ani": 76.5743, "matched_fragments": 69, "total_fragments": 1249, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Mesobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014138605.1", "gtdb_species": "s__Peribacillus huizhouensis", "ani": 76.4835, "matched_fragments": 62, "total_fragments": 1249, 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