{ "type": "genome", "identifier": "GCF_000829465.1", "organism": "Cohnella kolymensis", "title": "Cohnella kolymensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kingston University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000829465.1", "bioproject": "PRJNA224116", "biosample": "SAMN03274191", "wgs_master": "JXAL00000000.1", "refseq_category": "reference genome", "taxid": "1590652", "species_taxid": "1590652", "organism_name": "Cohnella kolymensis", "infraspecific_name": "strain=VKM B-2846", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/01/27", "asm_name": "ASM82946v1", "asm_submitter": "Kingston University", "gbrs_paired_asm": "GCA_000829465.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/829/465/GCF_000829465.1_ASM82946v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4344717", "genome_size_ungapped": "4344717", "gc_percent": "50.500000", "replicon_count": "0", "scaffold_count": "34", "contig_count": "34", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000829465.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "4614", "protein_coding_gene_count": "4210", "non_coding_gene_count": "79", "pubmed_id": "26769947" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-01-27", "dateModified": "2015-01-27", "datePublished": "2015-01-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Cohnella kolymensis" ], "sample_taxid": [ "1590652" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia: Kolyma" ], "sample_host_location_id": [], "data_size": "1.243 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4344717", "Number of Sequences": "34", "Longest Sequences (bp)": "765106", "N50 (bp)": "205304", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "50.5", "Number of CDSs": "4708", "Average Protein Length": "270.7", "Coding Ratio (%)": "88.0", "Number of rRNAs": "7", "Number of tRNAs": "53", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cohnella kolymensis", "strain": "strain=VKM B-2846", "accession": "GCA_000829465.1", "taxid": 1590652, "species_taxid": 1590652, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1424, "total_fragments": 1430, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cohnella luojiensis", "strain": "strain=CCTCC AB 208254", "accession": "GCA_004564235.1", "taxid": 652876, "species_taxid": 652876, "relation_to_type": "type", "validated": true, "ani": 78.2443, "matched_fragments": 256, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella herbarum", "strain": "strain=MFER-1", "accession": "GCA_012849095.1", "taxid": 2728023, "species_taxid": 2728023, "relation_to_type": "type", "validated": true, "ani": 78.048, "matched_fragments": 258, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella lupini", "strain": "strain=CECT 8236", "accession": "GCA_003386205.1", "taxid": 1294267, "species_taxid": 1294267, "relation_to_type": "type", "validated": true, "ani": 78.0198, "matched_fragments": 245, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella endophytica", "strain": "strain=M2MS4P-1", "accession": "GCA_003628305.1", "taxid": 2419778, "species_taxid": 2419778, "relation_to_type": "type", "validated": true, "ani": 77.9903, "matched_fragments": 249, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella panacarvi", "strain": "strain=Gsoil 349", "accession": "GCA_000515335.1", "taxid": 400776, "species_taxid": 400776, "relation_to_type": "type", "validated": true, "ani": 77.9578, "matched_fragments": 238, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella terricola", "strain": "strain=G13", "accession": "GCA_007786475.1", "taxid": 1289167, "species_taxid": 1289167, "relation_to_type": "type", "validated": true, "ani": 77.7582, "matched_fragments": 244, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella candidum", "strain": "strain=18JY8-7", "accession": "GCA_003713065.1", "taxid": 2674991, "species_taxid": 2674991, "relation_to_type": "type", "validated": true, "ani": 77.5923, "matched_fragments": 245, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella nanjingensis", "strain": "strain=DSM 28246", "accession": "GCA_014212125.1", "taxid": 1387779, "species_taxid": 1387779, "relation_to_type": "type", "validated": true, "ani": 77.3738, "matched_fragments": 199, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus paeoniae", "strain": "strain=M4BSY-1", "accession": "GCA_003388735.1", "taxid": 2292705, "species_taxid": 2292705, "relation_to_type": "type", "validated": true, "ani": 77.2948, "matched_fragments": 56, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella laeviribosi", "strain": "strain=DSM 21336", "accession": "GCA_000378425.1", "taxid": 380174, "species_taxid": 380174, "relation_to_type": "type", "validated": true, "ani": 77.1907, "matched_fragments": 158, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus tyrfis", "strain": "strain=MSt1", "accession": "GCA_000722545.1", "taxid": 1501230, "species_taxid": 1501230, "relation_to_type": "type", "validated": true, "ani": 76.9036, "matched_fragments": 100, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus mesophilus", "strain": "strain=SYSU K30004", "accession": "GCA_005938385.1", "taxid": 2582849, "species_taxid": 2582849, "relation_to_type": "type", "validated": true, "ani": 76.8211, "matched_fragments": 83, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus mendelii", "strain": "strain=C/2", "accession": "GCA_024498075.1", "taxid": 206163, "species_taxid": 206163, "relation_to_type": "type", "validated": true, "ani": 76.6536, "matched_fragments": 92, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus lycopersici", "strain": "strain=12200R-189", "accession": "GCA_010119935.1", "taxid": 2704462, "species_taxid": 2704462, "relation_to_type": "type", "validated": true, "ani": 76.6145, "matched_fragments": 108, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus elgii", "strain": "strain=NBRC 100335", "accession": "GCA_004000865.1", "taxid": 189691, "species_taxid": 189691, "relation_to_type": "type", "validated": true, "ani": 76.5539, "matched_fragments": 95, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus xylaniclasticus", "strain": "strain=NBRC 106381", "accession": "GCA_004001065.1", "taxid": 588083, "species_taxid": 588083, "relation_to_type": "type", "validated": true, "ani": 76.4524, "matched_fragments": 59, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus luteus", "strain": "strain=R-3", "accession": "GCA_006542765.1", "taxid": 2545753, "species_taxid": 2545753, "relation_to_type": "type", "validated": true, "ani": 76.2441, "matched_fragments": 64, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus catalpae", "strain": "strain=CGMCC 1.10784", "accession": "GCA_900112695.1", "taxid": 1045775, "species_taxid": 1045775, "relation_to_type": "type", "validated": true, "ani": 76.1975, "matched_fragments": 72, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus glycanilyticus", "strain": "strain=NBRC 16618", "accession": "GCA_004000805.1", "taxid": 126569, "species_taxid": 126569, "relation_to_type": "type", "validated": true, "ani": 76.1159, "matched_fragments": 83, "total_fragments": 1430, "ani_threshold": 95, 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luojiensis", "ani": 78.2443, "matched_fragments": 256, "total_fragments": 1430, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012849095.1", "gtdb_species": "s__Cohnella sp012849095", "ani": 78.0742, "matched_fragments": 256, "total_fragments": 1430, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003386205.1", "gtdb_species": "s__Cohnella lupini", "ani": 78.0177, "matched_fragments": 244, "total_fragments": 1430, 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