{ "type": "genome", "identifier": "GCF_000829675.1", "organism": "Acinetobacter rudis", "title": "Acinetobacter rudis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000829675.1", "bioproject": "PRJNA224116", "biosample": "SAMD00019984", "wgs_master": "BBRX00000000.1", "refseq_category": "na", "taxid": "632955", "species_taxid": "632955", "organism_name": "Acinetobacter rudis", "infraspecific_name": "strain=DSM 24031", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/01/20", "asm_name": "ASM82967v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_000829675.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/829/675/GCF_000829675.1_ASM82967v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3961794", "genome_size_ungapped": "3961794", "gc_percent": "39.000000", "replicon_count": "0", "scaffold_count": "151", "contig_count": "151", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000829675.1-RS_2024_08_20", "annotation_date": "2024-08-20", "total_gene_count": "3707", "protein_coding_gene_count": "3539", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-01-20", "dateModified": "2015-01-20", "datePublished": "2015-01-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter rudis" ], "sample_taxid": [ "632955" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Israel" ], "sample_host_location_id": [], "data_size": "1.127 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3961794", "Number of Sequences": "151", "Longest Sequences (bp)": "177545", "N50 (bp)": "54642", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.0", "Number of CDSs": "3482", "Average Protein Length": "310.9", "Coding Ratio (%)": "82.0", "Number of rRNAs": "2", "Number of tRNAs": "64", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter rudis", "strain": "strain=DSM 24031", "accession": "GCA_000829675.1", "taxid": 632955, "species_taxid": 632955, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1241, "total_fragments": 1251, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter rudis", "strain": "strain=CIP 110305", "accession": "GCA_000413895.1", "taxid": 632955, "species_taxid": 632955, "relation_to_type": "type", "validated": true, "ani": 99.997, "matched_fragments": 1244, "total_fragments": 1251, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter pullicarnis", "strain": "strain=S23", "accession": "GCA_006352475.1", "taxid": 2576829, "species_taxid": 2576829, "relation_to_type": "type", "validated": true, "ani": 79.0999, "matched_fragments": 394, "total_fragments": 1251, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gerneri", "strain": "strain=KCTC 12415", "accession": "GCA_000747725.1", "taxid": 202952, "species_taxid": 202952, "relation_to_type": "type", "validated": true, "ani": 78.9629, "matched_fragments": 341, "total_fragments": 1251, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter rongchengensis", "strain": "strain=WCHAc060115", "accession": "GCA_003611475.1", "taxid": 2419601, "species_taxid": 2419601, "relation_to_type": "type", "validated": true, "ani": 78.9171, "matched_fragments": 344, "total_fragments": 1251, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter sichuanensis", "strain": "strain=WCHAc060041", "accession": "GCA_003024515.2", "taxid": 2136183, "species_taxid": 2136183, "relation_to_type": "type", "validated": true, "ani": 78.9116, "matched_fragments": 373, "total_fragments": 1251, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter bohemicus", "strain": "strain=ANC 3994", "accession": "GCA_000367925.1", "taxid": 1435036, "species_taxid": 1435036, "relation_to_type": "type", "validated": true, "ani": 78.9088, "matched_fragments": 311, "total_fragments": 1251, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter lanii", "strain": "strain=185", "accession": "GCA_011578285.1", "taxid": 2715163, "species_taxid": 2715163, "relation_to_type": "type", "validated": true, "ani": 78.8233, "matched_fragments": 278, "total_fragments": 1251, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter bereziniae", "strain": "strain=CIP 70.12", "accession": "GCA_000368925.1", "taxid": 106648, "species_taxid": 106648, "relation_to_type": "type", "validated": true, "ani": 78.7861, "matched_fragments": 354, "total_fragments": 1251, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter piscicola", "strain": "strain=LW15", "accession": "GCA_002233755.1", "taxid": 2006115, "species_taxid": 2006115, "relation_to_type": "type", "validated": true, "ani": 78.7589, "matched_fragments": 344, "total_fragments": 1251, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter defluvii", "strain": "strain=WCHA30", "accession": "GCA_001704615.3", "taxid": 1871111, "species_taxid": 1871111, "relation_to_type": "type", "validated": true, "ani": 78.7369, "matched_fragments": 344, "total_fragments": 1251, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter haemolyticus", "strain": "strain=NCTC10305", "accession": "GCA_900444835.1", "taxid": 29430, "species_taxid": 29430, "relation_to_type": "type", "validated": true, "ani": 78.7075, "matched_fragments": 257, "total_fragments": 1251, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter silvestris", "strain": "strain=ANC 4999", "accession": "GCA_002135235.1", "taxid": 1977882, "species_taxid": 1977882, "relation_to_type": "type", "validated": true, "ani": 78.6533, "matched_fragments": 335, "total_fragments": 1251, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter tandoii", "strain": "strain=DSM 14970", "accession": "GCA_000621065.1", "taxid": 202954, "species_taxid": 202954, "relation_to_type": "type", "validated": true, "ani": 78.6154, "matched_fragments": 310, "total_fragments": 1251, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=PartI-Abaumannii-RM8376", "accession": "GCA_022870045.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 78.5801, "matched_fragments": 298, "total_fragments": 1251, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter guillouiae", "strain": "strain=CIP 63.46", "accession": "GCA_000368145.1", "taxid": 106649, "species_taxid": 106649, "relation_to_type": "type", "validated": true, "ani": 78.5583, "matched_fragments": 363, "total_fragments": 1251, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=ATCC 19606", "accession": "GCA_020911985.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 78.5473, "matched_fragments": 301, "total_fragments": 1251, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter tandoii", "strain": "strain=CIP 107469", "accession": "GCA_000400735.1", "taxid": 202954, "species_taxid": 202954, "relation_to_type": "type", "validated": true, "ani": 78.5434, "matched_fragments": 321, "total_fragments": 1251, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter proteolyticus", "strain": "strain=NIPH 809", "accession": "GCA_000367945.1", "taxid": 1776741, "species_taxid": 1776741, "relation_to_type": "type", "validated": true, "ani": 78.4922, "matched_fragments": 292, "total_fragments": 1251, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gyllenbergii", "strain": "strain=MTCC 11365", "accession": "GCA_000414075.1", "taxid": 134534, "species_taxid": 134534, "relation_to_type": "type", "validated": true, "ani": 78.4241, "matched_fragments": 310, "total_fragments": 1251, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter ihumii", "strain": "strain=Marseille-P8049", "accession": "GCA_900625095.1", "taxid": 2483802, "species_taxid": 2483802, "relation_to_type": "type", "validated": true, "ani": 78.4145, "matched_fragments": 255, "total_fragments": 1251, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gyllenbergii", "strain": "strain=CIP 110306", "accession": "GCA_000413855.1", "taxid": 134534, "species_taxid": 134534, "relation_to_type": "type", "validated": true, "ani": 78.227, "matched_fragments": 316, "total_fragments": 1251, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000829675.1", "gtdb_species": "s__Acinetobacter rudis", "ani": 100.0, "matched_fragments": 1241, "total_fragments": 1251, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_004345325.1", "gtdb_species": "s__Acinetobacter calcoaceticus_D", "ani": 79.1412, "matched_fragments": 370, "total_fragments": 1251, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006352475.1", "gtdb_species": "s__Acinetobacter pullicarnis", "ani": 79.1006, "matched_fragments": 393, "total_fragments": 1251, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001696605.3", "gtdb_species": "s__Acinetobacter wuhouensis", "ani": 78.9315, "matched_fragments": 345, "total_fragments": 1251, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.82", "min_intra_species_ani": "96.71", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.86", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_003024515.2", "gtdb_species": "s__Acinetobacter sichuanensis", "ani": 78.9238, "matched_fragments": 372, "total_fragments": 1251, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000367925.1", "gtdb_species": "s__Acinetobacter bohemicus", "ani": 78.9148, "matched_fragments": 310, "total_fragments": 1251, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.89", "min_intra_species_ani": "95.82", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.82", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_009707625.1", "gtdb_species": "s__Acinetobacter sp009707625", "ani": 78.896, "matched_fragments": 276, "total_fragments": 1251, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900406815.1", "gtdb_species": "s__Acinetobacter haemolyticus_A", "ani": 78.8935, "matched_fragments": 259, "total_fragments": 1251, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011578285.1", "gtdb_species": "s__Acinetobacter lanii", "ani": 78.8387, "matched_fragments": 276, "total_fragments": 1251, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.20", "min_intra_species_ani": "97.20", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000368925.1", "gtdb_species": "s__Acinetobacter bereziniae", "ani": 78.7982, "matched_fragments": 353, "total_fragments": 1251, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.33", "min_intra_species_ani": "97.29", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.83", "num_clustered_genomes": 53, "status": "-" }, { "accession": "GCF_902809855.1", "gtdb_species": "s__Acinetobacter sp902809855", "ani": 78.7982, "matched_fragments": 351, "total_fragments": 1251, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004336635.1", "gtdb_species": "s__Acinetobacter sp004336635", "ani": 78.7812, "matched_fragments": 293, "total_fragments": 1251, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.82", "min_intra_species_ani": "95.73", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.83", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001704615.3", "gtdb_species": "s__Acinetobacter defluvii", "ani": 78.7418, "matched_fragments": 343, "total_fragments": 1251, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.60", "min_intra_species_ani": "97.60", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002233755.1", "gtdb_species": "s__Acinetobacter piscicola", "ani": 78.7398, "matched_fragments": 345, "total_fragments": 1251, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000214135.1", "gtdb_species": "s__Acinetobacter sp000214135", "ani": 78.7255, "matched_fragments": 356, "total_fragments": 1251, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003268395.1", "gtdb_species": "s__Acinetobacter sp003268395", "ani": 78.7247, "matched_fragments": 349, "total_fragments": 1251, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011753255.1", "gtdb_species": "s__Acinetobacter sp011753255", "ani": 78.7184, "matched_fragments": 292, "total_fragments": 1251, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002135235.1", "gtdb_species": "s__Acinetobacter sp002135235", "ani": 78.6411, "matched_fragments": 336, "total_fragments": 1251, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008993995.1", "gtdb_species": "s__Acinetobacter brisouii_A", "ani": 78.6373, "matched_fragments": 249, "total_fragments": 1251, "gtdb_taxonomy": 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