{ "type": "genome", "identifier": "GCF_000830005.1", "organism": "Streptomyces vietnamensis", "title": "Streptomyces vietnamensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangdong Institute of Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000830005.1", "bioproject": "PRJNA224116", "biosample": "SAMN02730132", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "362257", "species_taxid": "362257", "organism_name": "Streptomyces vietnamensis", "infraspecific_name": "strain=GIMV4.0001", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/01/29", "asm_name": "ASM83000v1", "asm_submitter": "Guangdong Institute of Microbiology", "gbrs_paired_asm": "GCA_000830005.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/830/005/GCF_000830005.1_ASM83000v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9153777", "genome_size_ungapped": "9153777", "gc_percent": "72.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000830005.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "8292", "protein_coding_gene_count": "8010", "non_coding_gene_count": "95", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-01-29", "dateModified": "2015-01-29", "datePublished": "2015-01-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces vietnamensis" ], "sample_taxid": [ "362257" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Viet Nam: Do Xongpha" ], "sample_host_location_id": [], "data_size": "2.433 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9153777", "Number of Sequences": "2", "Longest Sequences (bp)": "8867142", "N50 (bp)": "8867142", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.0", "Number of CDSs": "8401", "Average Protein Length": "323.9", "Coding Ratio (%)": "89.2", "Number of rRNAs": "21", "Number of tRNAs": "81", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces vietnamensis", "strain": "strain=GIM4.0001", "accession": "GCA_000830005.1", "taxid": 362257, "species_taxid": 362257, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3048, "total_fragments": 3050, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces nymphaeiformis", "strain": "strain=SFB5A", "accession": "GCA_014203895.1", "taxid": 2663842, "species_taxid": 2663842, "relation_to_type": "type", "validated": true, "ani": 92.6366, "matched_fragments": 2292, "total_fragments": 3050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces tanashiensis", "strain": "strain=JCM 4086", "accession": "GCA_014648895.1", "taxid": 67367, "species_taxid": 67367, "relation_to_type": "type", "validated": true, "ani": 92.609, "matched_fragments": 2210, "total_fragments": 3050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces nashvillensis", "strain": "strain=JCM 4498", "accession": "GCA_014650095.1", "taxid": 67334, "species_taxid": 67334, "relation_to_type": "type", "validated": true, "ani": 92.5838, "matched_fragments": 2179, "total_fragments": 3050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces litmocidini", "strain": "strain=JCM 4394", "accession": "GCA_014649755.1", "taxid": 67318, "species_taxid": 67318, "relation_to_type": "type", "validated": true, "ani": 92.2173, "matched_fragments": 2098, "total_fragments": 3050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces venezuelae", "strain": "strain=ATCC 10712", "accession": "GCA_021432215.1", "taxid": 54571, "species_taxid": 54571, "relation_to_type": "type", "validated": true, "ani": 89.3181, "matched_fragments": 1560, "total_fragments": 3050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cinereoruber", "strain": "strain=JCM4205", "accession": "GCA_019880525.1", "taxid": 67260, "species_taxid": 67260, "relation_to_type": "type", "validated": true, "ani": 89.2729, "matched_fragments": 1787, "total_fragments": 3050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cinereoruber", "strain": "strain=JCM 4205", "accession": "GCA_014649095.1", "taxid": 67260, "species_taxid": 67260, "relation_to_type": "type", "validated": true, "ani": 89.2208, "matched_fragments": 1758, "total_fragments": 3050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces omiyaensis", "strain": "strain=JCM 4806", "accession": "GCA_014650895.1", "taxid": 68247, "species_taxid": 68247, "relation_to_type": "type", "validated": true, "ani": 86.7384, "matched_fragments": 1871, "total_fragments": 3050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces genisteinicus", "strain": "strain=CRPJ-33", "accession": "GCA_014489615.1", "taxid": 2768068, "species_taxid": 2768068, "relation_to_type": "type", "validated": true, "ani": 82.7329, "matched_fragments": 1515, "total_fragments": 3050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lichenis", "strain": "strain=LCR6-01", "accession": "GCA_023218175.1", "taxid": 2306967, "species_taxid": 2306967, "relation_to_type": "type", "validated": true, "ani": 82.5384, "matched_fragments": 1405, "total_fragments": 3050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces subrutilus", "strain": "strain=ATCC 27467", "accession": "GCA_008704535.1", "taxid": 36818, "species_taxid": 36818, "relation_to_type": "type", "validated": true, "ani": 82.4036, "matched_fragments": 1503, "total_fragments": 3050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces subrutilus", "strain": "strain=JCM 4834", "accession": "GCA_014650935.1", "taxid": 36818, "species_taxid": 36818, "relation_to_type": "type", "validated": true, "ani": 82.2716, "matched_fragments": 1495, "total_fragments": 3050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces sennicomposti", "strain": "strain=RCPT1-4", "accession": "GCA_019890635.1", 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2780140, "relation_to_type": "type", "validated": true, "ani": 81.657, "matched_fragments": 1558, "total_fragments": 3050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseostramineus", "strain": "strain=CECT 3273", "accession": "GCA_014203535.1", "taxid": 66898, "species_taxid": 66898, "relation_to_type": "suspected-type", "validated": true, "ani": 81.5753, "matched_fragments": 1465, "total_fragments": 3050, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000830005.1", "gtdb_species": "s__Streptomyces vietnamensis", "ani": 100.0, "matched_fragments": 3047, "total_fragments": 3050, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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