{ "type": "genome", "identifier": "GCF_000830155.1", "organism": "Acinetobacter indicus CIP 110367", "title": "Acinetobacter indicus CIP 110367", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000830155.1", "bioproject": "PRJNA224116", "biosample": "SAMD00019880", "wgs_master": "BBSF00000000.1", "refseq_category": "na", "taxid": "1341679", "species_taxid": "756892", "organism_name": "Acinetobacter indicus CIP 110367", "infraspecific_name": "strain=DSM 25388", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/01/23", "asm_name": "ASM83015v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_000830155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/830/155/GCF_000830155.1_ASM83015v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3078968", "genome_size_ungapped": "3078968", "gc_percent": "45.500000", "replicon_count": "0", "scaffold_count": "115", "contig_count": "115", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000830155.1-RS_2024_08_19", "annotation_date": "2024-08-19", "total_gene_count": "2973", "protein_coding_gene_count": "2812", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-01-23", "dateModified": "2015-01-23", "datePublished": "2015-01-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter indicus CIP 110367" ], "sample_taxid": [ "1341679" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India" ], "sample_host_location_id": [], "data_size": "0.878 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3078968", "Number of Sequences": "115", "Longest Sequences (bp)": "172562", "N50 (bp)": "83628", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.5", "Number of CDSs": "2860", "Average Protein Length": "306.2", "Coding Ratio (%)": "85.3", "Number of rRNAs": "2", "Number of tRNAs": "63", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter indicus", "strain": "strain=DSM 25388", "accession": "GCA_000830155.1", "taxid": 756892, "species_taxid": 756892, 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"below_threshold" }, { "organism_name": "Acinetobacter gandensis", "strain": "strain=ANC 4275", "accession": "GCA_001678755.1", "taxid": 1443941, "species_taxid": 1443941, "relation_to_type": "type", "validated": true, "ani": 80.3232, "matched_fragments": 421, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter tianfuensis", "strain": "strain=WCHAc060012", "accession": "GCA_003611465.1", "taxid": 2419603, "species_taxid": 2419603, "relation_to_type": "type", "validated": true, "ani": 80.2492, "matched_fragments": 442, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter kanungonis", "strain": "strain=PS-1", "accession": "GCA_009939195.1", "taxid": 2699469, "species_taxid": 2699469, "relation_to_type": "type", "validated": true, "ani": 80.1396, "matched_fragments": 461, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 1.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Acinetobacter", "indicus", "CIP", "110367" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }