{ "type": "genome", "identifier": "GCF_000832125.1", "organism": "Flavobacterium hibernum", "title": "Flavobacterium hibernum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "GCAT-SEEK", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000832125.1", "bioproject": "PRJNA224116", "biosample": "SAMN02934118", "wgs_master": "JPRK00000000.1", "refseq_category": "reference genome", "taxid": "37752", "species_taxid": "37752", "organism_name": "Flavobacterium hibernum", "infraspecific_name": "strain=DSM 12611", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/02/03", "asm_name": "ASM83212v1", "asm_submitter": "GCAT-SEEK", "gbrs_paired_asm": "GCA_000832125.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/832/125/GCF_000832125.1_ASM83212v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5283672", "genome_size_ungapped": "5283672", "gc_percent": "33.000000", "replicon_count": "0", "scaffold_count": "30", "contig_count": "30", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000832125.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "4513", "protein_coding_gene_count": "4426", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-02-03", "dateModified": "2015-02-03", "datePublished": "2015-02-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium hibernum" ], "sample_taxid": [ "37752" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica" ], "sample_host_location_id": [], "data_size": "1.469 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5283672", "Number of Sequences": "30", "Longest Sequences (bp)": "550880", "N50 (bp)": "300918", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.2", "Number of CDSs": "4444", "Average Protein Length": "344.7", "Coding Ratio (%)": "87.0", "Number of rRNAs": "6", "Number of tRNAs": "57", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium hibernum", "strain": "strain=DSM 12611", "accession": "GCA_000832125.1", "taxid": 37752, "species_taxid": 37752, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1748, "total_fragments": 1750, "ani_threshold": 95, "status": "conclusive" }, { 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"species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 82.8858, "matched_fragments": 1044, "total_fragments": 1750, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium daemonense", "strain": "strain=JCM 19455", "accession": "GCA_007341385.1", "taxid": 1393049, "species_taxid": 1393049, "relation_to_type": "type", "validated": true, "ani": 82.5784, "matched_fragments": 982, "total_fragments": 1750, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 81.9457, "matched_fragments": 1070, "total_fragments": 1750, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, 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