{
    "type": "genome",
    "identifier": "GCF_000833475.1",
    "organism": "Francisella tularensis subsp. tularensis",
    "title": "Francisella tularensis subsp. tularensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Los Alamos National Laboratory",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000833475.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03219196",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "119856",
        "species_taxid": "263",
        "organism_name": "Francisella tularensis subsp. tularensis",
        "infraspecific_name": "strain=NIH B-38",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/02/06",
        "asm_name": "ASM83347v1",
        "asm_submitter": "Los Alamos National Laboratory",
        "gbrs_paired_asm": "GCA_000833475.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/833/475/GCF_000833475.1_ASM83347v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1862444",
        "genome_size_ungapped": "1862444",
        "gc_percent": "32.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-03-03",
        "total_gene_count": "1912",
        "protein_coding_gene_count": "1696",
        "non_coding_gene_count": "47",
        "pubmed_id": "25931589"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-02-06",
    "dateModified": "2015-02-06",
    "datePublished": "2015-02-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Francisella tularensis subsp. tularensis"
        ],
        "sample_taxid": [
            "119856"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Ohio"
        ],
        "sample_host_location_id": [],
        "data_size": "0.506 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 2.08,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1862444",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "1862444",
        "N50 (bp)": "1862444",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "32.3",
        "Number of CDSs": "2007",
        "Average Protein Length": "275.9",
        "Coding Ratio (%)": "89.2",
        "Number of rRNAs": "7",
        "Number of tRNAs": "36",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Francisella tularensis subsp. novicida",
                "strain": "strain=U112",
                "accession": "GCA_000833375.1",
                "taxid": 264,
                "species_taxid": 263,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.0193,
                "matched_fragments": 561,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Francisella tularensis subsp. novicida",
                "strain": "strain=U112",
                "accession": "GCA_000014645.1",
                "taxid": 264,
                "species_taxid": 263,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.9744,
                "matched_fragments": 560,
                "total_fragments": 620,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Francisella hispaniensis",
                "strain": "strain=CCUG 58020",
                "accession": "GCA_001608445.1",
                "taxid": 622488,
                "species_taxid": 622488,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 513,
                "total_fragments": 620,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Francisella hispaniensis",
                "strain": "strain=CCUG 58020",
                "accession": "GCA_001885235.1",
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                "species_taxid": 622488,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.5593,
                "matched_fragments": 545,
                "total_fragments": 620,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Francisella opportunistica",
                "strain": "strain=PA05-1188",
                "accession": "GCA_003347135.1",
                "taxid": 2016517,
                "species_taxid": 2016517,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.2604,
                "matched_fragments": 493,
                "total_fragments": 620,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Francisella persica",
                "strain": "strain=ATCC VR-331",
                "accession": "GCA_001653955.1",
                "taxid": 954,
                "species_taxid": 954,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.051,
                "matched_fragments": 439,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Francisella noatunensis subsp. noatunensis",
                "strain": "strain=2005/50/F292-6",
                "accession": "GCA_009823375.1",
                "taxid": 360196,
                "species_taxid": 657445,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.2134,
                "matched_fragments": 320,
                "total_fragments": 620,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 2.08,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000008985.1",
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                "ani": 99.639,
                "matched_fragments": 597,
                "total_fragments": 620,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Francisella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.28",
                "min_intra_species_ani": "97.47",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 860,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001885235.1",
                "gtdb_species": "s__Francisella hispaniensis",
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                "matched_fragments": 544,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Francisella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.55",
                "min_intra_species_ani": "97.74",
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                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 4,
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            },
            {
                "accession": "GCF_002095075.1",
                "gtdb_species": "s__Francisella sp002095075",
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                "total_fragments": 620,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Francisella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.09",
                "min_intra_species_ani": "96.18",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_003347135.1",
                "gtdb_species": "s__Francisella opportunistica",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.87",
                "min_intra_species_ani": "99.85",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 4,
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            },
            {
                "accession": "GCF_001653955.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Francisella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
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                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_000156715.1",
                "gtdb_species": "s__Francisella philomiragia",
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                "matched_fragments": 403,
                "total_fragments": 620,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Francisella",
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                "mean_intra_species_ani": "97.81",
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                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 49,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
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        "mesophilic_range_tmp": 1.0,
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        "coccus_cell_shape": 0.0,
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        "coccobacillus_cell_shape": 0.0,
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    },
    "_genome_taxon": [
        "Francisella",
        "tularensis",
        "subsp.",
        "tularensis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}