{ "type": "genome", "identifier": "GCF_000834015.1", "organism": "Prevotella pectinovora", "title": "Prevotella pectinovora", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Ljubljana", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000834015.1", "bioproject": "PRJNA224116", "biosample": "SAMN03284261", "wgs_master": "JXQI00000000.1", "refseq_category": "na", "taxid": "1602169", "species_taxid": "1602169", "organism_name": "Prevotella pectinovora", "infraspecific_name": "strain=P4-76", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/02/09", "asm_name": "ASM83401v1", "asm_submitter": "University of Ljubljana", "gbrs_paired_asm": "GCA_000834015.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/834/015/GCF_000834015.1_ASM83401v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3263251", "genome_size_ungapped": "3263251", "gc_percent": "47.500000", "replicon_count": "0", "scaffold_count": "90", "contig_count": "90", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000834015.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "2622", "protein_coding_gene_count": "2473", "non_coding_gene_count": "73", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-02-09", "dateModified": "2015-02-09", "datePublished": "2015-02-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Prevotella pectinovora" ], "sample_taxid": [ "1602169" ], "sample_host_organism": [ "Sus scrofa domesticus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Slovenia: Ihan, pig farm" ], "sample_host_location_id": [], "data_size": "0.931 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3263251", "Number of Sequences": "90", "Longest Sequences (bp)": "212848", "N50 (bp)": "104660", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "47.5", "Number of CDSs": "2482", "Average Protein Length": "362.8", "Coding Ratio (%)": "82.8", "Number of rRNAs": "3", "Number of tRNAs": "55", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella pectinovora", "strain": "strain=P4-76", "accession": "GCA_000834015.1", "taxid": 1602169, "species_taxid": 1602169, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1041, "total_fragments": 1047, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella albensis", "strain": "strain=JCM 12258", "accession": "GCA_000613525.1", "taxid": 77768, "species_taxid": 77768, "relation_to_type": "type", "validated": true, "ani": 78.6188, "matched_fragments": 62, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella stercorea", "strain": "strain=DSM 18206", "accession": "GCA_000235885.1", "taxid": 363265, "species_taxid": 363265, "relation_to_type": "suspected-type", "validated": true, "ani": 78.4583, "matched_fragments": 206, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella hominis", "strain": "strain=BCRC 81118", "accession": "GCA_004535825.1", "taxid": 2518605, "species_taxid": 2518605, "relation_to_type": "type", "validated": true, "ani": 78.4475, "matched_fragments": 140, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella brevis", "strain": "strain=ATCC 19188", "accession": "GCA_000621725.1", "taxid": 83231, "species_taxid": 83231, "relation_to_type": "type", "validated": true, "ani": 78.3058, "matched_fragments": 86, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella albensis", "strain": "strain=DSM 11370", "accession": "GCA_000426565.1", "taxid": 77768, "species_taxid": 77768, "relation_to_type": "type", "validated": true, "ani": 78.0274, "matched_fragments": 61, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella lascolaii", "strain": "strain=khD1", "accession": "GCA_900079775.1", "taxid": 1776379, "species_taxid": 1776379, "relation_to_type": "type", "validated": true, "ani": 77.8229, "matched_fragments": 131, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella oris", "strain": "strain=NCTC13071", "accession": "GCA_900637655.1", "taxid": 28135, "species_taxid": 28135, "relation_to_type": "type", "validated": true, "ani": 77.7397, "matched_fragments": 60, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella melaninogenica", "strain": "strain=FDAARGOS_1566", "accession": "GCA_020735785.1", "taxid": 28132, "species_taxid": 28132, "relation_to_type": "suspected-type", "validated": true, "ani": 77.698, "matched_fragments": 60, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella oris", "strain": "strain=DSM 18711", "accession": "GCA_000377685.1", "taxid": 28135, "species_taxid": 28135, "relation_to_type": "type", "validated": true, "ani": 77.3667, "matched_fragments": 61, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella fusca", "strain": "strain=W1435", "accession": "GCA_018128145.1", "taxid": 589436, "species_taxid": 589436, "relation_to_type": "type", "validated": true, "ani": 77.2778, "matched_fragments": 78, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Palleniella intestinalis", "strain": "strain=PINT", "accession": "GCA_013166595.1", "taxid": 2736291, "species_taxid": 2736291, "relation_to_type": "type", "validated": true, "ani": 77.2725, "matched_fragments": 80, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xylanibacter rodentium", "strain": "strain=PROD", "accession": "GCA_013166575.1", "taxid": 2736289, "species_taxid": 2736289, "relation_to_type": "type", "validated": true, "ani": 77.2164, "matched_fragments": 116, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella fusca", "strain": "strain=W1435", "accession": "GCA_001262015.1", "taxid": 589436, "species_taxid": 589436, "relation_to_type": "type", "validated": true, "ani": 77.1979, "matched_fragments": 78, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella dentasini", "strain": "strain=JCM 15908", "accession": "GCA_000614065.1", "taxid": 589537, "species_taxid": 589537, "relation_to_type": "type", "validated": true, "ani": 77.1152, "matched_fragments": 81, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xylanibacter muris", "strain": "strain=PMUR", "accession": "GCA_013166605.1", "taxid": 2736290, "species_taxid": 2736290, "relation_to_type": "type", "validated": true, "ani": 76.9383, "matched_fragments": 90, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000834015.1", "gtdb_species": "s__Prevotella pectinovora", "ani": 100.0, "matched_fragments": 1041, "total_fragments": 1047, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.37", "min_intra_species_ani": "97.34", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.79", "num_clustered_genomes": 12, "status": "conclusive" }, { "accession": "GCA_900557405.1", "gtdb_species": "s__Prevotella sp900557405", "ani": 80.6825, "matched_fragments": 337, "total_fragments": 1047, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.88", "min_intra_species_ani": "97.88", "mean_intra_species_af": "0.76", "min_intra_species_af": "0.76", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900772835.1", "gtdb_species": "s__Prevotella sp900772835", "ani": 80.1535, "matched_fragments": 320, "total_fragments": 1047, "gtdb_taxonomy": 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