{ "type": "genome", "identifier": "GCF_000836095.1", "organism": "Acinetobacter lwoffii", "title": "Acinetobacter lwoffii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000836095.1", "bioproject": "PRJNA224116", "biosample": "SAMD00019884", "wgs_master": "BBSQ00000000.1", "refseq_category": "na", "taxid": "28090", "species_taxid": "28090", "organism_name": "Acinetobacter lwoffii", "infraspecific_name": "strain=NBRC 109760", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/02/03", "asm_name": "ASM83609v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_000836095.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/836/095/GCF_000836095.1_ASM83609v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3298884", "genome_size_ungapped": "3298884", "gc_percent": "43.000000", "replicon_count": "0", "scaffold_count": "100", "contig_count": "100", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000836095.1-RS_2024_08_09", "annotation_date": "2024-08-09", "total_gene_count": "3221", "protein_coding_gene_count": "3054", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-02-03", "dateModified": "2015-02-03", "datePublished": "2015-02-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter lwoffii" ], "sample_taxid": [ "28090" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "NA" ], "sample_host_location_id": [], "data_size": "0.942 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3298884", "Number of Sequences": "100", "Longest Sequences (bp)": "151659", "N50 (bp)": "69550", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.1", "Number of CDSs": "3129", "Average Protein Length": "299.5", "Coding Ratio (%)": "85.2", "Number of rRNAs": "2", "Number of tRNAs": "58", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter lwoffii", "strain": "strain=NCTC5866", "accession": "GCA_900699155.1", "taxid": 28090, "species_taxid": 28090, "relation_to_type": "type", "validated": true, "ani": 99.9985, "matched_fragments": 1047, "total_fragments": 1051, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter lwoffii", "strain": "strain=FDAARGOS 1393", "accession": "GCA_019048305.1", "taxid": 28090, "species_taxid": 28090, "relation_to_type": "type", "validated": true, "ani": 99.9862, "matched_fragments": 1047, "total_fragments": 1051, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter pecorum", "strain": "strain=Sa1BUA6", "accession": "GCA_014837015.1", "taxid": 2762215, "species_taxid": 2762215, "relation_to_type": "type", "validated": true, "ani": 90.601, "matched_fragments": 863, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pseudolwoffii", "strain": "strain=ANC 5044", "accession": "GCA_002803605.1", "taxid": 2053287, "species_taxid": 2053287, "relation_to_type": "type", "validated": true, "ani": 88.8596, "matched_fragments": 832, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter variabilis", "strain": "strain=NIPH 2171", "accession": "GCA_000369625.1", "taxid": 70346, "species_taxid": 70346, "relation_to_type": "type", "validated": true, "ani": 84.4065, "matched_fragments": 785, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter schindleri", "strain": "strain=CIP 107287", "accession": "GCA_000368625.1", "taxid": 108981, "species_taxid": 108981, "relation_to_type": "type", "validated": true, "ani": 83.198, "matched_fragments": 684, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter wanghuae", "strain": "strain=dk386", "accession": "GCA_009557235.1", "taxid": 2662362, "species_taxid": 2662362, "relation_to_type": "type", "validated": true, "ani": 81.212, "matched_fragments": 507, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter terrae", "strain": "strain=ANC 4282", "accession": "GCA_013004375.1", "taxid": 2731247, "species_taxid": 2731247, "relation_to_type": "type", "validated": true, "ani": 80.7035, "matched_fragments": 539, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter chengduensis", "strain": "strain=WCHAc060005", "accession": "GCA_003664645.1", "taxid": 2420890, "species_taxid": 2420890, "relation_to_type": "type", "validated": true, "ani": 80.3634, "matched_fragments": 455, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter silvestris", "strain": "strain=ANC 4999", "accession": "GCA_002135235.1", "taxid": 1977882, "species_taxid": 1977882, "relation_to_type": "type", "validated": true, "ani": 79.7217, "matched_fragments": 339, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pittii", "strain": "strain=CIP70.29", "accession": "GCA_024390955.1", "taxid": 48296, "species_taxid": 48296, "relation_to_type": "type", "validated": true, "ani": 79.445, "matched_fragments": 314, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=PartI-Abaumannii-RM8376", "accession": "GCA_022870045.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 78.9275, "matched_fragments": 298, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=ATCC 19606", "accession": "GCA_020911985.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 78.8868, "matched_fragments": 302, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000487975.1", "gtdb_species": "s__Acinetobacter lwoffii", "ani": 99.99, "matched_fragments": 1049, "total_fragments": 1051, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 96.2485, "mean_intra_species_ani": "99.52", "min_intra_species_ani": "96.36", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.86", "num_clustered_genomes": 9, "status": "inconclusive" }, { "accession": "GCF_011058205.1", "gtdb_species": "s__Acinetobacter fasciculus", "ani": 96.2769, "matched_fragments": 875, "total_fragments": 1051, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 96.2485, "mean_intra_species_ani": "96.87", "min_intra_species_ani": "96.57", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.83", "num_clustered_genomes": 19, "status": "inconclusive" }, { "accession": "GCF_014769185.1", "gtdb_species": "s__Acinetobacter lwoffii_D", "ani": 96.2409, "matched_fragments": 922, "total_fragments": 1051, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 96.2371, "mean_intra_species_ani": "96.35", "min_intra_species_ani": "96.24", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.85", "num_clustered_genomes": 7, "status": "inconclusive" }, { "accession": "GCA_000761495.1", "gtdb_species": "s__Acinetobacter idrijaensis", "ani": 96.1258, "matched_fragments": 895, "total_fragments": 1051, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 96.2371, "mean_intra_species_ani": "96.62", "min_intra_species_ani": "96.35", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.83", "num_clustered_genomes": 6, "status": "-" }, { 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"GCF_001647535.1", "gtdb_species": "s__Acinetobacter sp001647535", "ani": 90.5574, "matched_fragments": 854, "total_fragments": 1051, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.56", "min_intra_species_ani": "98.54", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.019, "cell_length": 0.052, "doubling_h": -0.144, "growth_tmp": 33.5, "optimum_tmp": 37.0, "optimum_ph": 7.1, "genome_size": 3390160.8, "gc_content": 42.085, "coding_genes": 3356.54, "rRNA16S_genes": 6.0, "tRNA_genes": 76.716, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.5, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Acinetobacter", "lwoffii" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }