{ "type": "genome", "identifier": "GCF_000875895.1", "organism": "Staphylococcus gallinarum", "title": "Staphylococcus gallinarum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000875895.1", "bioproject": "PRJNA224116", "biosample": "SAMN03278263", "wgs_master": "JXCF00000000.1", "refseq_category": "na", "taxid": "1293", "species_taxid": "1293", "organism_name": "Staphylococcus gallinarum", "infraspecific_name": "strain=DSM 20610", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/02/13", "asm_name": "ASM87589v1", "asm_submitter": "Zhejiang University", "gbrs_paired_asm": "GCA_000875895.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/875/895/GCF_000875895.1_ASM87589v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3171720", "genome_size_ungapped": "3171720", "gc_percent": "33.000000", "replicon_count": "1", "scaffold_count": "272", "contig_count": "272", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-25", "total_gene_count": "3223", "protein_coding_gene_count": "2998", "non_coding_gene_count": "91", "pubmed_id": "26044428" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-02-13", "dateModified": "2015-02-13", "datePublished": "2015-02-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Staphylococcus gallinarum" ], "sample_taxid": [ "1293" ], "sample_host_organism": [ "chicken" ], "sample_host_organism_id": [], "sample_host_disease": [ "infection" ], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Miinchen" ], "sample_host_location_id": [], "data_size": "0.888 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3171720", "Number of Sequences": "272", "Longest Sequences (bp)": "795487", "N50 (bp)": "348300", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.0", "Number of CDSs": "2969", "Average Protein Length": "287.4", "Coding Ratio (%)": "80.7", "Number of rRNAs": "1", "Number of tRNAs": "58", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Staphylococcus gallinarum", "strain": "strain=DSM 20610", "accession": "GCA_000875895.1", "taxid": 1293, "species_taxid": 1293, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 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"below_threshold" }, { "organism_name": "Staphylococcus shinii", "strain": "strain=K22-5M", "accession": "GCA_017583065.1", "taxid": 2912228, "species_taxid": 2912228, "relation_to_type": "type", "validated": true, "ani": 80.0273, "matched_fragments": 480, "total_fragments": 1005, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus equorum", "strain": "strain=FDAARGOS_1149", "accession": "GCA_016725305.1", "taxid": 246432, "species_taxid": 246432, "relation_to_type": "type", "validated": true, "ani": 80.0192, "matched_fragments": 467, "total_fragments": 1005, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus saprophyticus", "strain": "strain=NCTC7292", "accession": "GCA_900458885.1", "taxid": 29385, "species_taxid": 29385, "relation_to_type": "type", "validated": true, "ani": 80.0154, "matched_fragments": 465, "total_fragments": 1005, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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