{ "type": "genome", "identifier": "GCF_000931735.1", "organism": "Acinetobacter calcoaceticus", "title": "Acinetobacter calcoaceticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000931735.1", "bioproject": "PRJNA224116", "biosample": "SAMD00019676", "wgs_master": "BBTM00000000.1", "refseq_category": "na", "taxid": "471", "species_taxid": "471", "organism_name": "Acinetobacter calcoaceticus", "infraspecific_name": "strain=KCTC 2357", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/02/17", "asm_name": "ASM93173v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_000931735.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/931/735/GCF_000931735.1_ASM93173v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3893207", "genome_size_ungapped": "3893207", "gc_percent": "38.500000", "replicon_count": "0", "scaffold_count": "18", "contig_count": "18", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2023-08-06", "total_gene_count": "3737", "protein_coding_gene_count": "3602", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-02-17", "dateModified": "2015-02-17", "datePublished": "2015-02-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter calcoaceticus" ], "sample_taxid": [ "471" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "NA" ], "sample_host_location_id": [], "data_size": "1.103 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3893207", "Number of Sequences": "18", "Longest Sequences (bp)": "1439944", "N50 (bp)": "367132", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.6", "Number of CDSs": "3640", "Average Protein Length": "309.9", "Coding Ratio (%)": "86.9", "Number of rRNAs": "3", "Number of tRNAs": "65", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter calcoaceticus", "strain": "strain=NCTC12983", "accession": "GCA_900444805.1", "taxid": 471, "species_taxid": 471, 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"status": "below_threshold" }, { "organism_name": "Acinetobacter junii", "strain": "strain=NCTC10307", "accession": "GCA_900444875.1", "taxid": 40215, "species_taxid": 40215, "relation_to_type": "type", "validated": true, "ani": 80.122, "matched_fragments": 472, "total_fragments": 1288, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000368965.1", "gtdb_species": "s__Acinetobacter calcoaceticus", "ani": 99.9982, "matched_fragments": 1287, "total_fragments": 1288, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.00", "min_intra_species_ani": "95.80", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.85", "num_clustered_genomes": 26, "status": "conclusive" }, { "accession": "GCF_900520355.1", 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"coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Acinetobacter", "calcoaceticus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }