{
    "type": "genome",
    "identifier": "GCF_000931935.2",
    "organism": "Dethiosulfatarculus sandiegensis",
    "title": "Dethiosulfatarculus sandiegensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Oklahoma",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000931935.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02419822",
        "wgs_master": "AZAC00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1429043",
        "species_taxid": "1429043",
        "organism_name": "Dethiosulfatarculus sandiegensis",
        "infraspecific_name": "strain=SPR",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Minor",
        "genome_rep": "Full",
        "seq_rel_date": "2015/02/23",
        "asm_name": "ASM93193v2",
        "asm_submitter": "University of Oklahoma",
        "gbrs_paired_asm": "GCA_000931935.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/931/935/GCF_000931935.2_ASM93193v2",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5934994",
        "genome_size_ungapped": "5934772",
        "gc_percent": "52.000000",
        "replicon_count": "0",
        "scaffold_count": "82",
        "contig_count": "82",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000931935.2-RS_2024_07_03",
        "annotation_date": "2024-07-03",
        "total_gene_count": "4940",
        "protein_coding_gene_count": "4790",
        "non_coding_gene_count": "61",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-02-23",
    "dateModified": "2015-02-23",
    "datePublished": "2015-02-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Dethiosulfatarculus sandiegensis"
        ],
        "sample_taxid": [
            "1429043"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: San Francisco Bay"
        ],
        "sample_host_location_id": [],
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        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 8.33,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
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        "Total Sequence Length (bp)": "5934994",
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        "Longest Sequences (bp)": "501400",
        "N50 (bp)": "248211",
        "Gap Ratio (%)": "0.003943",
        "GCcontent (%)": "52.1",
        "Number of CDSs": "4905",
        "Average Protein Length": "336.3",
        "Coding Ratio (%)": "83.4",
        "Number of rRNAs": "3",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "9"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Desulfarculus baarsii",
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                "accession": "GCA_000143965.1",
                "taxid": 453230,
                "species_taxid": 453230,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 1938,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
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            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
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            {
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
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            {
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            },
            {
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_018819925.1",
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                "num_clustered_genomes": 4,
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            },
            {
                "accession": "GCA_016218705.1",
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "cell_length": null,
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        "growth_tmp": 30.0,
        "optimum_tmp": null,
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        "genome_size": 5934994.0,
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        "facultative_respiration": null,
        "anaerobic_respiration": null,
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        "mesophilic_range_tmp": null,
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        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
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        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
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        "sandiegensis"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}