{ "type": "genome", "identifier": "GCF_000934755.1", "organism": "Desulfonatronovibrio magnus", "title": "Desulfonatronovibrio magnus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000934755.1", "bioproject": "PRJNA224116", "biosample": "SAMN03351824", "wgs_master": "JYNP00000000.1", "refseq_category": "reference genome", "taxid": "698827", "species_taxid": "698827", "organism_name": "Desulfonatronovibrio magnus", "infraspecific_name": "strain=AHT22", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/02/26", "asm_name": "ASM93475v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000934755.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/934/755/GCF_000934755.1_ASM93475v1", 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"sample_host_location": [ "Russia: South West Siberia" ], "sample_host_location_id": [], "data_size": "1.361 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4809662", "Number of Sequences": "134", "Longest Sequences (bp)": "797457", "N50 (bp)": "94829", "Gap Ratio (%)": "0.274032", "GCcontent (%)": "44.9", "Number of CDSs": "4006", "Average Protein Length": "315.4", "Coding Ratio (%)": "78.8", "Number of rRNAs": "8", "Number of tRNAs": "45", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Desulfonatronovibrio magnus", "strain": "strain=AHT22", "accession": "GCA_000934755.1", "taxid": 698827, "species_taxid": 698827, "relation_to_type": "type", "validated": true, "ani": 100.0, 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"98.40", "min_intra_species_ani": "98.40", "mean_intra_species_af": "0.75", "min_intra_species_af": "0.75", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.176, "doubling_h": null, "growth_tmp": 30.0, "optimum_tmp": 37.0, "optimum_ph": null, "genome_size": 4809662.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 1.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Desulfonatronovibrio", "magnus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }