{
    "type": "genome",
    "identifier": "GCF_000935675.1",
    "organism": "Pseudomonas meliae",
    "title": "Pseudomonas meliae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "INRA",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000935675.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03328996",
        "wgs_master": "JYHE00000000.1",
        "refseq_category": "na",
        "taxid": "86176",
        "species_taxid": "86176",
        "organism_name": "Pseudomonas meliae",
        "infraspecific_name": "strain=CFBP 3225",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/03/02",
        "asm_name": "PMCFBP3225-G1",
        "asm_submitter": "INRA",
        "gbrs_paired_asm": "GCA_000935675.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/935/675/GCF_000935675.1_PMCFBP3225-G1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5143641",
        "genome_size_ungapped": "5143641",
        "gc_percent": "58.500000",
        "replicon_count": "0",
        "scaffold_count": "360",
        "contig_count": "360",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000935675.1-RS_2024_06_16",
        "annotation_date": "2024-06-16",
        "total_gene_count": "4793",
        "protein_coding_gene_count": "4309",
        "non_coding_gene_count": "58",
        "pubmed_id": "25931602"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-03-02",
    "dateModified": "2015-03-02",
    "datePublished": "2015-03-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudomonas meliae"
        ],
        "sample_taxid": [
            "86176"
        ],
        "sample_host_organism": [
            "Melia azedarach"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan"
        ],
        "sample_host_location_id": [],
        "data_size": "1.458 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5143641",
        "Number of Sequences": "360",
        "Longest Sequences (bp)": "116012",
        "N50 (bp)": "34682",
        "Gap Ratio (%)": "0.000350",
        "GCcontent (%)": "58.4",
        "Number of CDSs": "4776",
        "Average Protein Length": "307.5",
        "Coding Ratio (%)": "85.6",
        "Number of rRNAs": "3",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Pseudomonas meliae",
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                "accession": "GCA_000935675.1",
                "taxid": 86176,
                "species_taxid": 86176,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1524,
                "total_fragments": 1534,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pseudomonas meliae",
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                "accession": "GCA_001400515.1",
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                "species_taxid": 86176,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.8765,
                "matched_fragments": 1379,
                "total_fragments": 1534,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pseudomonas savastanoi",
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                "accession": "GCA_001401285.1",
                "taxid": 29438,
                "species_taxid": 29438,
                "relation_to_type": "suspected-type",
                "validated": true,
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                "matched_fragments": 1435,
                "total_fragments": 1534,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pseudomonas savastanoi",
                "strain": "strain=ICMP7711",
                "accession": "GCA_001483545.1",
                "taxid": 29438,
                "species_taxid": 29438,
                "relation_to_type": "pathovar",
                "validated": true,
                "ani": 98.6161,
                "matched_fragments": 1401,
                "total_fragments": 1534,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pseudomonas amygdali",
                "strain": "strain=DSM 105780",
                "accession": "GCA_022828345.1",
                "taxid": 47877,
                "species_taxid": 47877,
                "relation_to_type": "pathovar",
                "validated": true,
                "ani": 98.6028,
                "matched_fragments": 1460,
                "total_fragments": 1534,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pseudomonas savastanoi",
                "strain": "strain=CFBP 5062",
                "accession": "GCA_001538155.1",
                "taxid": 29438,
                "species_taxid": 29438,
                "relation_to_type": "pathovar",
                "validated": true,
                "ani": 98.5668,
                "matched_fragments": 1469,
                "total_fragments": 1534,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pseudomonas amygdali",
                "strain": "strain=CFBP 3205",
                "accession": "GCA_000935645.1",
                "taxid": 47877,
                "species_taxid": 47877,
                "relation_to_type": "suspected-type",
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                "ani": 98.5182,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pseudomonas amygdali",
                "strain": "strain=ICMP 3918",
                "accession": "GCA_002699855.1",
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pseudomonas syringae group genomosp. 7",
                "strain": "strain=ICMP 4091",
                "accession": "GCA_022557255.1",
                "taxid": 251699,
                "species_taxid": 251699,
                "relation_to_type": "pathovar",
                "validated": true,
                "ani": 89.7644,
                "matched_fragments": 1400,
                "total_fragments": 1534,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas syringae group genomosp. 7",
                "strain": "strain=LMG 5067",
                "accession": "GCA_022557235.1",
                "taxid": 251699,
                "species_taxid": 251699,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.748,
                "matched_fragments": 1398,
                "total_fragments": 1534,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas defluvii",
                "strain": "strain=WCHP16",
                "accession": "GCA_001695625.1",
                "taxid": 1876757,
                "species_taxid": 1876757,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1996,
                "matched_fragments": 552,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas ceruminis",
                "strain": "strain=BML-PP028",
                "accession": "GCA_013373895.1",
                "taxid": 2740516,
                "species_taxid": 2740516,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5111,
                "matched_fragments": 620,
                "total_fragments": 1534,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
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            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_002699855.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.09",
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                "num_clustered_genomes": 51,
                "status": "-"
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            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
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                "mean_intra_species_ani": "98.42",
                "min_intra_species_ani": "97.41",
                "mean_intra_species_af": "0.91",
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                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
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            },
            {
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    },
    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}