{ "type": "genome", "identifier": "GCF_000939975.1", "organism": "Pseudomonas saudimassiliensis", "title": "Pseudomonas saudimassiliensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000939975.1", "bioproject": "PRJNA224116", "biosample": "SAMEA2539499", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1461581", "species_taxid": "1461581", "organism_name": "Pseudomonas saudimassiliensis", "infraspecific_name": "strain=12M76_air", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/09/09", "asm_name": "PRJEB5504_assembly_1", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_000939975.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/939/975/GCF_000939975.1_PRJEB5504_assembly_1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3344211", "genome_size_ungapped": "3342755", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000939975.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3120", "protein_coding_gene_count": "3010", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-09-09", "dateModified": "2014-09-09", "datePublished": "2014-09-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas saudimassiliensis" ], "sample_taxid": [ "1461581" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.932 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3344211", "Number of Sequences": "3", "Longest Sequences (bp)": "3338867", "N50 (bp)": "3338867", "Gap Ratio (%)": "0.043538", "GCcontent (%)": "62.5", "Number of CDSs": "3054", "Average Protein Length": "331.5", "Coding Ratio (%)": "90.8", "Number of rRNAs": "10", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halopseudomonas bauzanensis", "strain": "strain=DSM 22558", "accession": "GCA_900111225.1", "taxid": 653930, "species_taxid": 653930, "relation_to_type": "type", "validated": true, "ani": 84.6538, "matched_fragments": 860, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas bauzanensis", "strain": "strain=CGMCC 1.9095", "accession": "GCA_900114735.1", "taxid": 653930, "species_taxid": 653930, "relation_to_type": "type", "validated": true, "ani": 84.6235, "matched_fragments": 872, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas litoralis", "strain": "strain=2SM5", "accession": "GCA_900105005.1", "taxid": 797277, "species_taxid": 797277, "relation_to_type": "type", "validated": true, "ani": 82.92, "matched_fragments": 800, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas pachastrellae", "strain": "strain=JCM 12285", "accession": "GCA_900114765.1", "taxid": 254161, "species_taxid": 254161, "relation_to_type": "type", "validated": true, "ani": 79.6891, "matched_fragments": 454, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas pachastrellae", "strain": "strain=CCUG 46540", "accession": "GCA_001989375.1", "taxid": 254161, "species_taxid": 254161, "relation_to_type": "type", "validated": true, "ani": 79.6359, "matched_fragments": 453, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas jinjuensis", "strain": "strain=NBRC 103047", "accession": "GCA_002091655.1", "taxid": 198616, "species_taxid": 198616, "relation_to_type": "type", "validated": true, "ani": 79.5913, "matched_fragments": 443, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas aestusnigri", "strain": "strain=CECT 8317", "accession": "GCA_900108005.1", "taxid": 857252, "species_taxid": 857252, "relation_to_type": "type", "validated": true, "ani": 79.5733, "matched_fragments": 471, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas jinjuensis", "strain": "strain=JCM 21621", "accession": "GCA_900103845.1", "taxid": 198616, "species_taxid": 198616, "relation_to_type": "type", "validated": true, "ani": 79.5057, "matched_fragments": 446, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas aestusnigri", "strain": "strain=VGXO14", "accession": "GCA_002197985.1", "taxid": 857252, "species_taxid": 857252, "relation_to_type": "type", "validated": true, "ani": 79.5041, "matched_fragments": 486, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 79.4652, "matched_fragments": 439, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas hydrolytica", "strain": "strain=DSWY01", "accession": "GCA_021495345.2", "taxid": 2493633, "species_taxid": 2493633, "relation_to_type": "type", "validated": true, "ani": 79.1967, "matched_fragments": 452, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas saliphila", "strain": "strain=16W4-4-3", "accession": "GCA_008638345.1", "taxid": 2586906, "species_taxid": 2586906, "relation_to_type": "type", "validated": true, "ani": 79.1197, "matched_fragments": 466, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_024169805.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 78.9931, "matched_fragments": 416, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas profundi", "strain": "strain=M5", "accession": "GCA_008638305.1", "taxid": 1981513, "species_taxid": 1981513, "relation_to_type": "type", "validated": true, "ani": 78.8659, "matched_fragments": 428, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=JCM 5962", "accession": "GCA_022496575.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 78.7285, "matched_fragments": 426, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_013373935.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 78.6386, "matched_fragments": 381, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas japonica", "strain": "strain=DSM 22348", "accession": "GCA_900188455.1", "taxid": 256466, "species_taxid": 256466, "relation_to_type": "type", "validated": true, "ani": 78.5711, "matched_fragments": 387, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas batumici", "strain": "strain=UCM B-321", "accession": "GCA_000820515.1", "taxid": 226910, "species_taxid": 226910, "relation_to_type": "type", "validated": true, "ani": 78.398, "matched_fragments": 354, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas spelaei", "strain": "strain=CCM 7893", "accession": "GCA_009724245.1", "taxid": 1055469, "species_taxid": 1055469, "relation_to_type": "type", "validated": true, "ani": 77.7616, "matched_fragments": 282, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas quercus", "strain": "strain=hsmgli-8", "accession": "GCA_012033695.1", "taxid": 2722792, "species_taxid": 2722792, "relation_to_type": "type", "validated": true, "ani": 77.4864, "matched_fragments": 191, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter vinifirmus", "strain": "strain=FB1", "accession": "GCA_002258215.1", "taxid": 355591, "species_taxid": 355591, "relation_to_type": "type", "validated": true, "ani": 77.4778, "matched_fragments": 142, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter fuscus", "strain": "strain=NH169-3", "accession": "GCA_003007675.1", "taxid": 2109942, "species_taxid": 2109942, "relation_to_type": "type", "validated": true, "ani": 77.438, "matched_fragments": 108, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000939975.1", "gtdb_species": "s__Pseudomonas_D saudimassiliensis", "ani": 100.0, "matched_fragments": 1113, "total_fragments": 1113, "gtdb_taxonomy": 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