{ "type": "genome", "identifier": "GCF_000941055.1", "organism": "Siansivirga zeaxanthinifaciens CC-SAMT-1", "title": "Siansivirga zeaxanthinifaciens CC-SAMT-1", "description": "na", "data type": "Genome sequencing and assembly", "organization": "none", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000941055.1", "bioproject": "PRJNA224116", "biosample": "SAMN03379851", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1454006", "species_taxid": "762954", "organism_name": "Siansivirga zeaxanthinifaciens CC-SAMT-1", "infraspecific_name": "strain=CC-SAMT-1", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/03/04", "asm_name": "ASM94105v1", "asm_submitter": "none", "gbrs_paired_asm": "GCA_000941055.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/941/055/GCF_000941055.1_ASM94105v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3303986", "genome_size_ungapped": "3303986", "gc_percent": "33.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000941055.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "2897", "protein_coding_gene_count": "2814", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-03-04", "dateModified": "2015-03-04", "datePublished": "2015-03-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Siansivirga zeaxanthinifaciens CC-SAMT-1" ], "sample_taxid": [ "1454006" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Taiwan" ], "sample_host_location_id": [], "data_size": "0.915 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3303986", "Number of Sequences": "1", "Longest Sequences (bp)": "3303986", "N50 (bp)": "3303986", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.5", "Number of CDSs": "2868", "Average Protein Length": "347.6", "Coding Ratio (%)": "90.5", "Number of rRNAs": "9", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mariniflexile gromovii", "strain": "strain=KCTC 12570", "accession": "GCA_017814435.1", "taxid": 362523, "species_taxid": 362523, "relation_to_type": "type", "validated": true, "ani": 79.5276, "matched_fragments": 473, 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"status": "below_threshold" }, { "organism_name": "Aestuariibaculum sediminum", "strain": "strain=TT11", "accession": "GCA_014596945.1", "taxid": 2770637, "species_taxid": 2770637, "relation_to_type": "type", "validated": true, "ani": 78.6047, "matched_fragments": 382, "total_fragments": 1101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter lectus", "strain": "strain=DSM 15365", "accession": "GCA_900112395.1", "taxid": 221126, "species_taxid": 221126, "relation_to_type": "type", "validated": true, "ani": 78.535, "matched_fragments": 426, "total_fragments": 1101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=DSM 29199", "accession": "GCA_014202225.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 78.5139, "matched_fragments": 443, "total_fragments": 1101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter alginicilyticus", "strain": "strain=HZ22", "accession": "GCA_001310225.1", "taxid": 1736674, "species_taxid": 1736674, "relation_to_type": "type", "validated": true, "ani": 78.5098, "matched_fragments": 357, "total_fragments": 1101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=RU-4-M-4", "accession": "GCA_008630605.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 78.5023, "matched_fragments": 442, "total_fragments": 1101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=RU-4-M-4", "accession": "GCA_007559325.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 78.4989, "matched_fragments": 443, "total_fragments": 1101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamlana nanhaiensis", "strain": "strain=FHC16", 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1719036, "relation_to_type": "type", "validated": true, "ani": 78.1961, "matched_fragments": 363, "total_fragments": 1101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Seonamhaeicola maritimus", "strain": "strain=1505", "accession": "GCA_008056315.1", "taxid": 2591822, "species_taxid": 2591822, "relation_to_type": "type", "validated": true, "ani": 78.062, "matched_fragments": 326, "total_fragments": 1101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera marina", "strain": "strain=NBU2968", "accession": "GCA_019880635.1", "taxid": 2873265, "species_taxid": 2873265, "relation_to_type": "type", "validated": true, "ani": 77.803, "matched_fragments": 203, "total_fragments": 1101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella ulvae", "strain": "strain=HU1-3", "accession": "GCA_016827605.1", "taxid": 2799948, "species_taxid": 2799948, "relation_to_type": "type", "validated": true, "ani": 77.5025, "matched_fragments": 278, "total_fragments": 1101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella flava", "strain": "strain=T58", "accession": "GCA_004310325.1", "taxid": 2527939, "species_taxid": 2527939, "relation_to_type": "type", "validated": true, "ani": 77.4896, "matched_fragments": 262, "total_fragments": 1101, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000941055.1", "gtdb_species": "s__Siansivirga zeaxanthinifaciens", "ani": 100.0, "matched_fragments": 1101, "total_fragments": 1101, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Siansivirga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, 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