{
    "type": "genome",
    "identifier": "GCF_000950005.1",
    "organism": "Photobacterium angustum",
    "title": "Photobacterium angustum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "FDA/CFSAN",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000950005.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03295481",
        "wgs_master": "JZSO00000000.1",
        "refseq_category": "na",
        "taxid": "661",
        "species_taxid": "661",
        "organism_name": "Photobacterium angustum",
        "infraspecific_name": "strain=ATCC 25915",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/03/10",
        "asm_name": "CFSAN029433_01.0",
        "asm_submitter": "FDA/CFSAN",
        "gbrs_paired_asm": "GCA_000950005.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/950/005/GCF_000950005.1_CFSAN029433_01.0",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4935352",
        "genome_size_ungapped": "4935352",
        "gc_percent": "39.500000",
        "replicon_count": "0",
        "scaffold_count": "166",
        "contig_count": "166",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000950005.1-RS_2024_04_21",
        "annotation_date": "2024-04-21",
        "total_gene_count": "4523",
        "protein_coding_gene_count": "4217",
        "non_coding_gene_count": "91",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-03-10",
    "dateModified": "2015-03-10",
    "datePublished": "2015-03-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Photobacterium angustum"
        ],
        "sample_taxid": [
            "661"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "missing"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.405 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4935352",
        "Number of Sequences": "166",
        "Longest Sequences (bp)": "368080",
        "N50 (bp)": "183096",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "39.5",
        "Number of CDSs": "4474",
        "Average Protein Length": "304.0",
        "Coding Ratio (%)": "82.7",
        "Number of rRNAs": "6",
        "Number of tRNAs": "72",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Photobacterium angustum",
                "strain": "strain=ATCC 25915",
                "accession": "GCA_000950005.1",
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                "species_taxid": 661,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1595,
                "total_fragments": 1595,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Photobacterium angustum",
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                "accession": "GCA_003026365.1",
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                "species_taxid": 661,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9849,
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                "total_fragments": 1595,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Photobacterium leiognathi",
                "strain": "strain=ATCC 25521",
                "accession": "GCA_003026235.1",
                "taxid": 553611,
                "species_taxid": 553611,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.6008,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "species_taxid": 553611,
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                "ani": 84.5998,
                "matched_fragments": 1079,
                "total_fragments": 1595,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium lucens",
                "strain": "strain=CAIM 1937",
                "accession": "GCA_009873615.1",
                "taxid": 2562949,
                "species_taxid": 2562949,
                "relation_to_type": "type",
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                "ani": 84.1517,
                "matched_fragments": 933,
                "total_fragments": 1595,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium aquimaris",
                "strain": "strain=GCSL-P109",
                "accession": "GCA_001676085.1",
                "taxid": 512643,
                "species_taxid": 512643,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 80.6483,
                "matched_fragments": 616,
                "total_fragments": 1595,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium aquimaris",
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                "accession": "GCA_003025415.1",
                "taxid": 512643,
                "species_taxid": 512643,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 80.6316,
                "matched_fragments": 630,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium kishitanii",
                "strain": "strain=ATCC:BAA-1194",
                "accession": "GCA_003026355.1",
                "taxid": 318456,
                "species_taxid": 318456,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.54,
                "matched_fragments": 626,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium andalusiense",
                "strain": "strain=CECT 9192",
                "accession": "GCA_900185625.1",
                "taxid": 2204296,
                "species_taxid": 2204296,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.5013,
                "matched_fragments": 611,
                "total_fragments": 1595,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium toruni",
                "strain": "strain=CECT 9189",
                "accession": "GCA_024529955.1",
                "taxid": 1935446,
                "species_taxid": 1935446,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4559,
                "matched_fragments": 581,
                "total_fragments": 1595,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium kishitanii",
                "strain": "strain=ATCC BAA-1194",
                "accession": "GCA_000950095.1",
                "taxid": 318456,
                "species_taxid": 318456,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4262,
                "matched_fragments": 640,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium kishitanii",
                "strain": "strain=pjapo.1.1",
                "accession": "GCA_003025975.1",
                "taxid": 318456,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3618,
                "matched_fragments": 639,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium phosphoreum",
                "strain": "strain=ATCC 11040",
                "accession": "GCA_000949955.1",
                "taxid": 659,
                "species_taxid": 659,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2317,
                "matched_fragments": 578,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium sanguinicancri",
                "strain": "strain=CECT 7579",
                "accession": "GCA_024346675.1",
                "taxid": 875932,
                "species_taxid": 875932,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2568,
                "matched_fragments": 375,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aliivibrio fischeri",
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                "accession": "GCA_023983475.1",
                "taxid": 668,
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                "relation_to_type": "suspected-type",
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                "ani": 78.1776,
                "matched_fragments": 241,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio nitrifigilis",
                "strain": "strain=NFV-1",
                "accession": "GCA_015686695.1",
                "taxid": 2789781,
                "species_taxid": 2789781,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8451,
                "matched_fragments": 151,
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                "ani_threshold": 95,
                "status": "below_threshold"
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        ],
        "cc_result": {
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            "contamination": 0.0,
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        "gtdb_result": [
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                "accession": "GCF_003026365.1",
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                "accession": "GCF_003026105.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Photobacterium",
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                "accession": "GCF_000153325.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "accession": "GCF_000950415.1",
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            },
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}