{ "type": "genome", "identifier": "GCF_000950575.1", "organism": "Psychromicrobium lacuslunae", "title": "Psychromicrobium lacuslunae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CSIR-Institute of Himalayan Bioresource Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000950575.1", "bioproject": "PRJNA224116", "biosample": "SAMN03366954", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1618207", "species_taxid": "1618207", "organism_name": "Psychromicrobium lacuslunae", "infraspecific_name": "strain=IHBB 11108", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/03/11", "asm_name": "ASM95057v1", "asm_submitter": "CSIR-Institute of Himalayan Bioresource Technology", "gbrs_paired_asm": "GCA_000950575.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/950/575/GCF_000950575.1_ASM95057v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3599434", "genome_size_ungapped": "3599434", "gc_percent": "59.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000950575.1-RS_2024_04_07", "annotation_date": "2024-04-07", "total_gene_count": "3393", "protein_coding_gene_count": "3323", "non_coding_gene_count": "54", "pubmed_id": "25908143" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-03-11", "dateModified": "2015-03-11", "datePublished": "2015-03-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Psychromicrobium lacuslunae" ], "sample_taxid": [ "1618207" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India:Chandra Tal lake at Lahual and Spiti" ], "sample_host_location_id": [], "data_size": "1.019 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 15.0, "max": 15.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3599434", "Number of Sequences": "2", "Longest Sequences (bp)": "3595718", "N50 (bp)": "3595718", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.0", "Number of CDSs": "3405", "Average Protein Length": "320.6", "Coding Ratio (%)": "91.0", "Number of rRNAs": "6", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Psychromicrobium lacuslunae", "strain": "strain=IHBB 11108", "accession": "GCA_000950575.1", "taxid": 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"matched_fragments": 108, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Galactobacter caseinivorans", "strain": "strain=JZ R-183", "accession": "GCA_003640665.1", "taxid": 2676123, "species_taxid": 2676123, "relation_to_type": "type", "validated": true, "ani": 77.7864, "matched_fragments": 55, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter ulcerisalmonis", "strain": "", "accession": "GCA_900609065.1", "taxid": 2483813, "species_taxid": 2483813, "relation_to_type": "type", "validated": true, "ani": 77.7782, "matched_fragments": 127, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenarthrobacter nicotinovorans", "strain": "strain=JCM 3874", "accession": "GCA_014648735.1", "taxid": 29320, "species_taxid": 29320, "relation_to_type": "suspected-type", "validated": true, "ani": 77.7735, "matched_fragments": 114, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter enclensis", "strain": "strain=NIO-1008", "accession": "GCA_900094675.1", "taxid": 993070, "species_taxid": 993070, "relation_to_type": "type", "validated": true, "ani": 77.5703, "matched_fragments": 133, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter enclensis", "strain": "strain=NIO-1008", "accession": "GCA_001457025.1", "taxid": 993070, "species_taxid": 993070, "relation_to_type": "type", "validated": true, "ani": 77.5703, "matched_fragments": 133, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter silvisoli", "strain": "strain=NEAU-SA1", "accession": "GCA_003369445.1", "taxid": 2291022, "species_taxid": 2291022, "relation_to_type": "type", "validated": true, "ani": 77.559, "matched_fragments": 148, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter jiangjiafuii", "strain": "strain=zg-ZUI227", "accession": "GCA_018622995.1", "taxid": 2817475, "species_taxid": 2817475, "relation_to_type": "type", "validated": true, "ani": 77.5325, "matched_fragments": 127, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter gallicola", "strain": "strain=Sa2CUA1", "accession": "GCA_014836775.1", "taxid": 2762225, "species_taxid": 2762225, "relation_to_type": "type", "validated": true, "ani": 77.4898, "matched_fragments": 117, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acaricomes phytoseiuli", "strain": "strain=DSM 14247", "accession": "GCA_000376245.1", "taxid": 291968, "species_taxid": 291968, "relation_to_type": "type", "validated": true, "ani": 77.3981, "matched_fragments": 155, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_013408295.1", "gtdb_species": "s__Psychromicrobium silvestre", "ani": 78.8159, "matched_fragments": 402, "total_fragments": 1199, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Psychromicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004028095.1", "gtdb_species": "s__Paenarthrobacter ureafaciens", "ani": 78.538, "matched_fragments": 112, "total_fragments": 1199, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Paenarthrobacter", 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