{
    "type": "genome",
    "identifier": "GCF_000960975.1",
    "organism": "Martelella endophytica",
    "title": "Martelella endophytica",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Gyeonsang National university",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000960975.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03284753",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1486262",
        "species_taxid": "1486262",
        "organism_name": "Martelella endophytica",
        "infraspecific_name": "strain=YC6887",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/03/24",
        "asm_name": "ASM96097v1",
        "asm_submitter": "Gyeonsang National university",
        "gbrs_paired_asm": "GCA_000960975.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/960/975/GCF_000960975.1_ASM96097v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4817335",
        "genome_size_ungapped": "4817335",
        "gc_percent": "62.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000960975.1-RS_2024_04_24",
        "annotation_date": "2024-04-24",
        "total_gene_count": "4542",
        "protein_coding_gene_count": "4410",
        "non_coding_gene_count": "66",
        "pubmed_id": "25953177"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-03-24",
    "dateModified": "2015-03-24",
    "datePublished": "2015-03-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Martelella endophytica"
        ],
        "sample_taxid": [
            "1486262"
        ],
        "sample_host_organism": [
            "Rosa rugosa"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Korea: Namhae Island"
        ],
        "sample_host_location_id": [],
        "data_size": "1.335 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4817335",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "4817335",
        "N50 (bp)": "4817335",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "62.1",
        "Number of CDSs": "4506",
        "Average Protein Length": "317.7",
        "Coding Ratio (%)": "89.2",
        "Number of rRNAs": "9",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Martelella endophytica",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "conclusive"
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            {
                "organism_name": "Martelella radicis",
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                "species_taxid": 1397476,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
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            },
            {
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                "matched_fragments": 922,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "accession": "GCA_005924265.1",
                "taxid": 2583532,
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                "matched_fragments": 910,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Martelella limonii",
                "strain": "strain=NBRC 109441",
                "accession": "GCA_013344475.1",
                "taxid": 1647649,
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                "matched_fragments": 794,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella zoogloeoides",
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                "accession": "GCA_020883495.1",
                "taxid": 352475,
                "species_taxid": 352475,
                "relation_to_type": "type",
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                "matched_fragments": 472,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella pollutisoli",
                "strain": "strain=KCTC 52677",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella yambaruensis",
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                "taxid": 415996,
                "species_taxid": 415996,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 532,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium vallis",
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                "accession": "GCA_003985155.1",
                "taxid": 634290,
                "species_taxid": 634290,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ciceribacter ferrooxidans",
                "strain": "strain=F8825",
                "accession": "GCA_004137355.1",
                "taxid": 2509717,
                "species_taxid": 2509717,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4722,
                "matched_fragments": 432,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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                "accession": "GCF_000960975.1",
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}