{ "type": "genome", "identifier": "GCF_000963705.1", "organism": "Elstera litoralis", "title": "Elstera litoralis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Agharkar Research Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000963705.1", "bioproject": "PRJNA224116", "biosample": "SAMN03435125", "wgs_master": "LAJY00000000.1", "refseq_category": "reference genome", "taxid": "552518", "species_taxid": "552518", "organism_name": "Elstera litoralis", "infraspecific_name": "strain=Dia-1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/03/26", "asm_name": "Ellito1.0", "asm_submitter": "Agharkar Research Institute", "gbrs_paired_asm": "GCA_000963705.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/963/705/GCF_000963705.1_Ellito1.0", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3832037", "genome_size_ungapped": "3832037", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "1012", "contig_count": "1012", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000963705.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "4775", "protein_coding_gene_count": "4209", "non_coding_gene_count": "73", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-03-26", "dateModified": "2015-03-26", "datePublished": "2015-03-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Elstera litoralis" ], "sample_taxid": [ "552518" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Konstanz" ], "sample_host_location_id": [], "data_size": "1.083 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.48, "contamination": 6.37, "strain_heterogeneity": 71.43, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3832037", "Number of Sequences": "1012", "Longest Sequences (bp)": "24341", "N50 (bp)": "6876", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.2", "Number of CDSs": "3645", "Average Protein Length": "249.8", "Coding Ratio (%)": "71.3", "Number of rRNAs": "7", "Number of tRNAs": "61", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Elstera litoralis", "strain": "strain=Dia-1", "accession": "GCA_000963705.1", "taxid": 552518, "species_taxid": 552518, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 806, "total_fragments": 816, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Elstera cyanobacteriorum", "strain": "strain=CGMCC 1.15802", "accession": "GCA_014643715.1", "taxid": 2022747, "species_taxid": 2022747, "relation_to_type": "type", "validated": true, "ani": 81.6666, "matched_fragments": 603, "total_fragments": 816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Elstera cyanobacteriorum", "strain": "strain=TH019", "accession": "GCA_002251735.1", "taxid": 2022747, "species_taxid": 2022747, "relation_to_type": "type", "validated": true, "ani": 81.65, "matched_fragments": 603, "total_fragments": 816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum cavernae", "strain": "strain=K2W22B-5", "accession": "GCA_003590795.1", "taxid": 2320860, "species_taxid": 2320860, "relation_to_type": "type", "validated": true, "ani": 76.3575, "matched_fragments": 141, "total_fragments": 816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Skermanella 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"GCA_000299935.1", "taxid": 526216, "species_taxid": 526216, "relation_to_type": "type", "validated": true, "ani": 76.03, "matched_fragments": 96, "total_fragments": 816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum tabaci", "strain": "strain=W712", "accession": "GCA_014596085.1", "taxid": 2752310, "species_taxid": 2752310, "relation_to_type": "type", "validated": true, "ani": 75.9049, "matched_fragments": 100, "total_fragments": 816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Skermanella pratensis", "strain": "strain=W17", "accession": "GCA_008843145.1", "taxid": 2233999, "species_taxid": 2233999, "relation_to_type": "type", "validated": true, "ani": 75.8647, "matched_fragments": 71, "total_fragments": 816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niveispirillum irakense", "strain": "strain=DSM 11586", "accession": "GCA_000429645.1", "taxid": 34011, "species_taxid": 34011, 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